PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.3_#_344
Common NameCOCSUDRAFT_40283
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 594aa    MW: 63372.2 Da    PI: 7.5547
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.3_#_344genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.55.8e-13272308339
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                          ++k+ rr+++NReAAr+sRqR+ka++++Lee+v +L 
  fgenesh1_pg.3_#_344 272 DDKVKRRLAQNREAARKSRQRRKAYVQNLEEEVRQLR 308
                          79*******************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-6270337IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.921272307IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-8273308No hitNo description
PfamPF001704.0E-10273308IPR004827Basic-leucine zipper domain
CDDcd147085.67E-20274326No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-10275309No hitNo description
PROSITE patternPS000360277292IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MTAPTSSPPP QQQAAPPVTA IAPPALVQPA MSMPPPVSPG TAVQAAARLG QSAVPGGQRM  60
EVPGGQQLAG GQRLESVGQR PTFSGQRLES LAGNLGSMMA SSNNTLDNMR ALGSISSGGV  120
VPAAMQLAQR GAMAGYPAAM LQQQYLSSIP WLLRMQARTL FYLICDTLLD LGGAQQAMFP  180
GGQQLDGAAQ AAAQMPLSMP EGEAMLNTNS ISSKSADQAG FPQLSKKRKS SSGRTMSGVN  240
LNGDLSQKYS LSQSDDDDDN TRADGEEEGD MDDKVKRRLA QNREAARKSR QRRKAYVQNL  300
EEEVRQLRTG KIPPQTLVAQ SSSLGTGSLG GAAALGLGPD AGSLFSAMLH RLPAGSLPGA  360
GDALAQQNHE VLQAFDKWRA EHVATVLAVR QAVNEGAADA ALRPLIEEAR SQLWTLFAMK  420
KAVVCSESVL LIMNLEHLLP PERLYAWLGG LRASNACNGL LTKLADLGLG TQQRMKLEAL  480
RESLLQQENS LGRGYSEVLA ELGARAAQQP VLLPGQLPDK RVWDSPDILG KLDAMRMTLL  540
RGDNVWEQFL EQTEGFLSLR QYGVAVTALM ETSLQLQNLH LPWLQLLRRP AGE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650681.10.0hypothetical protein COCSUDRAFT_40283
TrEMBLI0Z6680.0I0Z668_COCSC; Uncharacterized protein
STRINGXP_005650681.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-19bZIP family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]