PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.18_#_189

Common Name

COCSUDRAFT_44587

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

Nin-like

Protein Properties

Length: 372aa MW: 40729.4 Da PI: 8.4947

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.18_#_189	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	35.6	1.8e-11	199	233	18	52
RWP-RK 18 ikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++AA++L +++ vLK + R++G+ RWP+Rk +sl fgenesh1_pg.18_#_189 199 LEEAARKLHMSVAVLKPTVRKLGVTRWPSRKRNSL 233 89*****************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	7.2E-10	199	233	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MPRDVRFNPC NIGCESAAVN FPVEEQGLPG IPWDTSDTLM PTRHFRDCCF DLLEGTSSTP 60 WNSTGFEDDL LLEFSTGADG LNAALLPPVV GGDSEFACDL SDPLQIAPPV ATIHGRETEG 120 DSLQHPSTAS SFCNAVPIPE MVPQKNPEQA AQGCTGKKRT RKPNTAGEWM TMEFLEAGGF 180 LDMPLAVECP GFPPIQPRLE EAARKLHMSV AVLKPTVRKL GVTRWPSRKR NSLRRLMETA 240 QTMGKPINKF GGDITELRRL LEAERKSYQG DSENWPMIQK VRDTYYKTRF LHKRGRKEPK 300 APSTPPPAAP FLASASSCSM PMAKQPPEGL TLDTLQPGRG ARSGSAPPDV AWGAHGSRVH 360 RRRSRRAASI F*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MPRDVRFNPC NIGCESAAVN FPVEEQGLPG IPWDTSDTLM PTRHFRDCCF DLLEGTSSTP  60
WNSTGFEDDL LLEFSTGADG LNAALLPPVV GGDSEFACDL SDPLQIAPPV ATIHGRETEG  120
DSLQHPSTAS SFCNAVPIPE MVPQKNPEQA AQGCTGKKRT RKPNTAGEWM TMEFLEAGGF  180
LDMPLAVECP GFPPIQPRLE EAARKLHMSV AVLKPTVRKL GVTRWPSRKR NSLRRLMETA  240
QTMGKPINKF GGDITELRRL LEAERKSYQG DSENWPMIQK VRDTYYKTRF LHKRGRKEPK  300
APSTPPPAAP FLASASSCSM PMAKQPPEGL TLDTLQPGRG ARSGSAPPDV AWGAHGSRVH  360
RRRSRRAASI F*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644314.1	0.0	hypothetical protein COCSUDRAFT_44587
TrEMBL	I0YN01	0.0	I0YN01_COCSC; Uncharacterized protein
STRING	XP_005644314.1	0.0	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-06	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17037742

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]