PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pm.C_110118

Common Name

COCSUDRAFT_53925

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

GATA

Protein Properties

Length: 213aa MW: 23074.3 Da PI: 11.2452

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pm.C_110118	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	41.6	1.7e-13	9	40	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++C tt++ +WR+gp+ ++ LCnaCG +y estExt_fgenesh1_pm.C_110118 9 CRHCMTTTSVCWRKGPEDKPVLCNACGARYLV 40 **************88888*****9955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	10.277	3	35	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.2E-6	3	61	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.76E-10	4	43	No hit	No description
Gene3D	G3DSA:3.30.50.10	6.1E-10	5	39	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.08E-10	8	64	No hit	No description
Pfam	PF00320	8.5E-11	9	39	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MRSGSGGPCR HCMTTTSVCW RKGPEDKPVL CNACGARYLV KRSLEGYFPH SRPVTKKDGP 60 GHKAGKGGRK ELSVFLTGRP SSGHLKRNST DSKRGRKPTK SLIRPNSISR NGRTVVDRGT 120 QTMVHPQLFL PSGLTLHDGA ARISGPPSLF TLSPTKVIKE DEFNSIAVST LTLLRHSESH 180 SDSAEDGTCT PTPSQSFRRN PRKPSATIRA LF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005646538.1	1e-154	hypothetical protein COCSUDRAFT_53925
TrEMBL	I0YUC5	1e-152	I0YUC5_COCSC; Uncharacterized protein
STRING	XP_005646538.1	1e-153	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP450	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47140.1	9e-13	GATA transcription factor 27

Link Out ? help Back to Top
Entrez Gene	17039979

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]