PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_40143

Common Name

COCSUDRAFT_46620

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

G2-like

Protein Properties

Length: 315aa MW: 34753.1 Da PI: 5.0816

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_40143	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30.9	5.8e-10	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m v+gLt++h+kSHLQkYRl estExt_fgenesh1_pg.C_40143 1 MAVEGLTIYHIKSHLQKYRL 20 89*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-9	1	22	IPR009057	Homeodomain-like
Pfam	PF14379	6.1E-14	141	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAVEGLTIYH IKSHLQKYRL NVRLPGESGD MISGPDESEE PSRRKRRSRS HGQASSRRRS 60 SRQRKRRSRS SDEDSDEDDM EDEDMDDDEN FEEGISRARP GTSVSGINGS SPHGGSPRGG 120 SPRGVEPLEV PDLDPEKQHS LEEALLKQMD MQKRLHEQLE EQRRLQLSLE AHGRYITSLI 180 QKKGLEGLPP QTKEALDAAL VPPQGSGLST LTHNTAPQWT PSVSEGSSLA QQVGHVMHHS 240 TAFMLGSASA TDPESSLLLD TNMQAAAAVW DPSQAHGLDQ SGSKQLYEEP KELYEEPGQL 300 YEERGGHVKP EEQL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	58	RRKRRSRSHGQASSRRR
2	44	66	KRRSRSHGQASSRRRSSRQRKRR
3	62	67	QRKRRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649718.1	0.0	hypothetical protein COCSUDRAFT_46620
TrEMBL	I0Z3F5	0.0	I0Z3F5_COCSC; Uncharacterized protein
STRING	XP_005649718.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.2	8e-09	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	17043176

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]