PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_270025
Common NameCOCSUDRAFT_68416
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C2H2
Protein Properties Length: 301aa    MW: 31760.3 Da    PI: 8.5091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_270025genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-051637323
                               ETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                               C +C++ Fs+ s+L +H++  H
  estExt_Genemark1.C_270025 16 CYYCDRIFSDESTLIQHQKAkH 37
                               99****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508089.696968IPR003656Zinc finger, BED-type
SMARTSM00355151437IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801637IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7871637IPR007087Zinc finger, C2H2
PROSITE profilePS501578.853861IPR007087Zinc finger, C2H2
SMARTSM003552.33861IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804061IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVRKKKKREA EQVPWCYYCD RIFSDESTLI QHQKAKHFKC TTCHRKLTSA SGLRVHCHQV  60
HRFTLDKVPA AIPGKDSIDL EVFGMSGVPE GASPGILTPE EDEPASKAAK VDAPGPTAPL  120
QPPQPHHPPF NGGLPIMPPR PLLPPPMRPP LMATPGFPFG IPPSAGHPGP YPGVAPPWPP  180
PPFLHGLPPQ PTGPLQQVPA FPIGSAHAAS SPAPLFPIAT GAETPASQGP VNLDVSASAR  240
SVPGSQPPPG LTPVDQHQSP AAPLISQPSS IDGVSTHDIS AEELRARHPR YTARVSVPQT  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127RKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005642638.10.0hypothetical protein COCSUDRAFT_68416
TrEMBLI0YI750.0I0YI75_COCSC; Uncharacterized protein
STRINGXP_005642638.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.16e-39C2H2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]