PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.5361_g
Common NameCOCSUDRAFT_56332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bHLH
Protein Properties Length: 1580aa    MW: 167796 Da    PI: 8.7322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.5361_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-1458103555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + E+rRRdriN++f+ L+ l+P +     +K++Ka+ L  +veYIk+Lq
  Genemark1.5361_g  58 HVQTEQRRRDRINEGFAALKALMPGQ-----EKMDKATFLNSTVEYIKQLQ 103
                       7889*********************8.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.20553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-1256103No hitNo description
SuperFamilySSF474595.63E-1556111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1557105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-1358103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-1359108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5001139.94812741534IPR000719Protein kinase domain
SMARTSM002209.6E-5912741533IPR000719Protein kinase domain
SuperFamilySSF561122.29E-7012761530IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.8E-1712761339No hitNo description
PfamPF000692.5E-5112791528IPR000719Protein kinase domain
PROSITE patternPS00107012801301IPR017441Protein kinase, ATP binding site
CDDcd139991.24E-8012801529No hitNo description
Gene3DG3DSA:1.10.510.102.9E-5113401531No hitNo description
PROSITE patternPS00108013941406IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1580 aa     Download sequence    Send to blast
MQAPTDGLEG LVAHSVRELE SMSRDDVRNN HSDQDLDLER CAKVPKTGSE PVKSGLRHVQ  60
TEQRRRDRIN EGFAALKALM PGQEKMDKAT FLNSTVEYIK QLQGVMQQLV TLGVVSKLPE  120
EAQWNIRVLL PRKNELTVAP FTVPAARATA PPAAPAVDPA ATTAALLGML LTQSNQLSVA  180
PQQGQAGLDI AQLVQQAAYS QQLQAQQSQL LQALQMQHLF QAANTSNGMP VENMGAPATG  240
AMPNVGQFMP SNSMPQVMLM PPMTVGCNQG APASVMPKAR KNGKVRRHTT AARIAKPAPE  300
MDAPAMDVGR PAPTEAPLAA ASRTNGAGGP GDFSDIPIFF AKIGVFSNNA TVNTWRLGWS  360
FTAGETVQGG NIYTAGVDVL KLNGSSVQLE SLSPNNTVKP FSWTSVSFLG TKAAMPTLSA  420
PYRVAPINDV AFNNLVCAQL PLQPQGGSPA SAPSAAPEQV AQAGKNLITK PSPLYVEYAP  480
VVYLQNQDQS GSSWQSDINS LITFLVRVAN LGQDGSIDAG RIKLQYWFNG PSDIPDAADP  540
LSQFTMNCLD TTTTCGDLTY NITTGLPNVN GARYVLNLGF KTGAAVLLNE TETSVRDQTT  600
ESGGRGSGAP KVSVYEALLR IESRQFLREM NASSDYSYLD TPRSSAPISN TTNIVPRLAE  660
PNTHIPAFLD NGIAWGGQPV AVAVAGANAE PPMPTPSSIN SVACVGGVCG LSTLYCCYTV  720
DNKPVAADIP DVWPPVATPV PAALRGANLN CASGNCTEGA PSPSPAVPSP TPSAPAPLPE  780
ASSAPATAPS PAVLGPGASI GQRLAEAEPG LGAPVAPATA AAPVPPFAPG PGPVTSVPAA  840
QKSSASISSG FCALYLIIWR HRRRKLRSLD SKSSPRDPGS PHSGLPIALR PPYKQGSADS  900
QEPFLDGRRR TAALVPWRKS KAGQDLHNAP QLALRPHGPP ADISEELAAS KAASPAMELH  960
AGAVGSPKQQ HVHHAPHRLL SGLADLPGAG HIQAAGHLPM RLLRGGNARD AAVGGAAVQR  1020
WMGEAQLAQR GETSSAYGGA SPVTRAPYGY IANSPSDLLL FTNPLVQGTL PNDWEDRYRS  1080
AVVSDWAGSP RGDGSMRGRQ SPNLIGDMLG HRRTPRWLGD PYGLDVNGHA VASPDRHNLP  1140
KIAASLGRHV PALTYGWQRE NGGIGHPANR SVQTAPNLSS GDDSSMSMDW AAEEGTDSGK  1200
VGLRRVKSWT GAVQQIPDDM RGEDLPLDRR RLRRAMSSAA NLPPLAALPP PISMGIPPPA  1260
NIDMDVDFEA EIKPHLRTCL GQGGFGTVFE ATWRGKRVAV KVLQGLDGGG KTVHFEALRR  1320
EVQLASRFNS ERLVQVYGAS LRDPASACLV MELVQGGNLH QRIYNTSQPR LSHLEILQIA  1380
HDVAEGLAYM HPSVIHRDLK PQNILIDGAG RVKIADFGIS RVKDPAKTFL STTNVNGTPQ  1440
YMAPEQFAGA RCDEKVDVYA LGTILNECAT RRPPWREFNN AFQIIVQVAI KAARPAMDAS  1500
FSEPLRRLIA KCWAQDPRAR PSCYEIMRLT EILLAQAKRR SEHGAAQQIA QQSDREAQPC  1560
PAKEKPKHLR RASSEGGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ppz_A9e-441263153731300Serine/threonine-protein kinase CTR1
3ppz_B9e-441263153731300Serine/threonine-protein kinase CTR1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646429.10.0hypothetical protein COCSUDRAFT_56332
TrEMBLI0YU160.0I0YU16_COCSC; Uncharacterized protein
STRINGXP_005646429.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.26e-14WRKY family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]