PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.5361_g

Common Name

COCSUDRAFT_56332

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bHLH

Protein Properties

Length: 1580aa MW: 167796 Da PI: 8.7322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.5361_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.8	1.1e-14	58	103	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + E+rRRdriN++f+ L+ l+P + +K++Ka+ L +veYIk+Lq Genemark1.5361_g 58 HVQTEQRRRDRINEGFAALKALMPGQ-----EKMDKATFLNSTVEYIKQLQ 103 7889*******************8.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.205	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.43E-12	56	103	No hit	No description
SuperFamily	SSF47459	5.63E-15	56	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-15	57	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-13	58	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50011	39.948	1274	1534	IPR000719	Protein kinase domain
SMART	SM00220	9.6E-59	1274	1533	IPR000719	Protein kinase domain
SuperFamily	SSF56112	2.29E-70	1276	1530	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	2.8E-17	1276	1339	No hit	No description
Pfam	PF00069	2.5E-51	1279	1528	IPR000719	Protein kinase domain
PROSITE pattern	PS00107	0	1280	1301	IPR017441	Protein kinase, ATP binding site
CDD	cd13999	1.24E-80	1280	1529	No hit	No description
Gene3D	G3DSA:1.10.510.10	2.9E-51	1340	1531	No hit	No description
PROSITE pattern	PS00108	0	1394	1406	IPR008271	Serine/threonine-protein kinase, active site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1580 aa Download sequence Send to blast
MQAPTDGLEG LVAHSVRELE SMSRDDVRNN HSDQDLDLER CAKVPKTGSE PVKSGLRHVQ 60 TEQRRRDRIN EGFAALKALM PGQEKMDKAT FLNSTVEYIK QLQGVMQQLV TLGVVSKLPE 120 EAQWNIRVLL PRKNELTVAP FTVPAARATA PPAAPAVDPA ATTAALLGML LTQSNQLSVA 180 PQQGQAGLDI AQLVQQAAYS QQLQAQQSQL LQALQMQHLF QAANTSNGMP VENMGAPATG 240 AMPNVGQFMP SNSMPQVMLM PPMTVGCNQG APASVMPKAR KNGKVRRHTT AARIAKPAPE 300 MDAPAMDVGR PAPTEAPLAA ASRTNGAGGP GDFSDIPIFF AKIGVFSNNA TVNTWRLGWS 360 FTAGETVQGG NIYTAGVDVL KLNGSSVQLE SLSPNNTVKP FSWTSVSFLG TKAAMPTLSA 420 PYRVAPINDV AFNNLVCAQL PLQPQGGSPA SAPSAAPEQV AQAGKNLITK PSPLYVEYAP 480 VVYLQNQDQS GSSWQSDINS LITFLVRVAN LGQDGSIDAG RIKLQYWFNG PSDIPDAADP 540 LSQFTMNCLD TTTTCGDLTY NITTGLPNVN GARYVLNLGF KTGAAVLLNE TETSVRDQTT 600 ESGGRGSGAP KVSVYEALLR IESRQFLREM NASSDYSYLD TPRSSAPISN TTNIVPRLAE 660 PNTHIPAFLD NGIAWGGQPV AVAVAGANAE PPMPTPSSIN SVACVGGVCG LSTLYCCYTV 720 DNKPVAADIP DVWPPVATPV PAALRGANLN CASGNCTEGA PSPSPAVPSP TPSAPAPLPE 780 ASSAPATAPS PAVLGPGASI GQRLAEAEPG LGAPVAPATA AAPVPPFAPG PGPVTSVPAA 840 QKSSASISSG FCALYLIIWR HRRRKLRSLD SKSSPRDPGS PHSGLPIALR PPYKQGSADS 900 QEPFLDGRRR TAALVPWRKS KAGQDLHNAP QLALRPHGPP ADISEELAAS KAASPAMELH 960 AGAVGSPKQQ HVHHAPHRLL SGLADLPGAG HIQAAGHLPM RLLRGGNARD AAVGGAAVQR 1020 WMGEAQLAQR GETSSAYGGA SPVTRAPYGY IANSPSDLLL FTNPLVQGTL PNDWEDRYRS 1080 AVVSDWAGSP RGDGSMRGRQ SPNLIGDMLG HRRTPRWLGD PYGLDVNGHA VASPDRHNLP 1140 KIAASLGRHV PALTYGWQRE NGGIGHPANR SVQTAPNLSS GDDSSMSMDW AAEEGTDSGK 1200 VGLRRVKSWT GAVQQIPDDM RGEDLPLDRR RLRRAMSSAA NLPPLAALPP PISMGIPPPA 1260 NIDMDVDFEA EIKPHLRTCL GQGGFGTVFE ATWRGKRVAV KVLQGLDGGG KTVHFEALRR 1320 EVQLASRFNS ERLVQVYGAS LRDPASACLV MELVQGGNLH QRIYNTSQPR LSHLEILQIA 1380 HDVAEGLAYM HPSVIHRDLK PQNILIDGAG RVKIADFGIS RVKDPAKTFL STTNVNGTPQ 1440 YMAPEQFAGA RCDEKVDVYA LGTILNECAT RRPPWREFNN AFQIIVQVAI KAARPAMDAS 1500 FSEPLRRLIA KCWAQDPRAR PSCYEIMRLT EILLAQAKRR SEHGAAQQIA QQSDREAQPC 1560 PAKEKPKHLR RASSEGGAS*

Sequence ? help Back to Top

Protein Sequence Length: 1580 aa Download sequence Send to blast

MQAPTDGLEG LVAHSVRELE SMSRDDVRNN HSDQDLDLER CAKVPKTGSE PVKSGLRHVQ  60
TEQRRRDRIN EGFAALKALM PGQEKMDKAT FLNSTVEYIK QLQGVMQQLV TLGVVSKLPE  120
EAQWNIRVLL PRKNELTVAP FTVPAARATA PPAAPAVDPA ATTAALLGML LTQSNQLSVA  180
PQQGQAGLDI AQLVQQAAYS QQLQAQQSQL LQALQMQHLF QAANTSNGMP VENMGAPATG  240
AMPNVGQFMP SNSMPQVMLM PPMTVGCNQG APASVMPKAR KNGKVRRHTT AARIAKPAPE  300
MDAPAMDVGR PAPTEAPLAA ASRTNGAGGP GDFSDIPIFF AKIGVFSNNA TVNTWRLGWS  360
FTAGETVQGG NIYTAGVDVL KLNGSSVQLE SLSPNNTVKP FSWTSVSFLG TKAAMPTLSA  420
PYRVAPINDV AFNNLVCAQL PLQPQGGSPA SAPSAAPEQV AQAGKNLITK PSPLYVEYAP  480
VVYLQNQDQS GSSWQSDINS LITFLVRVAN LGQDGSIDAG RIKLQYWFNG PSDIPDAADP  540
LSQFTMNCLD TTTTCGDLTY NITTGLPNVN GARYVLNLGF KTGAAVLLNE TETSVRDQTT  600
ESGGRGSGAP KVSVYEALLR IESRQFLREM NASSDYSYLD TPRSSAPISN TTNIVPRLAE  660
PNTHIPAFLD NGIAWGGQPV AVAVAGANAE PPMPTPSSIN SVACVGGVCG LSTLYCCYTV  720
DNKPVAADIP DVWPPVATPV PAALRGANLN CASGNCTEGA PSPSPAVPSP TPSAPAPLPE  780
ASSAPATAPS PAVLGPGASI GQRLAEAEPG LGAPVAPATA AAPVPPFAPG PGPVTSVPAA  840
QKSSASISSG FCALYLIIWR HRRRKLRSLD SKSSPRDPGS PHSGLPIALR PPYKQGSADS  900
QEPFLDGRRR TAALVPWRKS KAGQDLHNAP QLALRPHGPP ADISEELAAS KAASPAMELH  960
AGAVGSPKQQ HVHHAPHRLL SGLADLPGAG HIQAAGHLPM RLLRGGNARD AAVGGAAVQR  1020
WMGEAQLAQR GETSSAYGGA SPVTRAPYGY IANSPSDLLL FTNPLVQGTL PNDWEDRYRS  1080
AVVSDWAGSP RGDGSMRGRQ SPNLIGDMLG HRRTPRWLGD PYGLDVNGHA VASPDRHNLP  1140
KIAASLGRHV PALTYGWQRE NGGIGHPANR SVQTAPNLSS GDDSSMSMDW AAEEGTDSGK  1200
VGLRRVKSWT GAVQQIPDDM RGEDLPLDRR RLRRAMSSAA NLPPLAALPP PISMGIPPPA  1260
NIDMDVDFEA EIKPHLRTCL GQGGFGTVFE ATWRGKRVAV KVLQGLDGGG KTVHFEALRR  1320
EVQLASRFNS ERLVQVYGAS LRDPASACLV MELVQGGNLH QRIYNTSQPR LSHLEILQIA  1380
HDVAEGLAYM HPSVIHRDLK PQNILIDGAG RVKIADFGIS RVKDPAKTFL STTNVNGTPQ  1440
YMAPEQFAGA RCDEKVDVYA LGTILNECAT RRPPWREFNN AFQIIVQVAI KAARPAMDAS  1500
FSEPLRRLIA KCWAQDPRAR PSCYEIMRLT EILLAQAKRR SEHGAAQQIA QQSDREAQPC  1560
PAKEKPKHLR RASSEGGAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ppz_A	9e-44	1263	1537	31	300	Serine/threonine-protein kinase CTR1
3ppz_B	9e-44	1263	1537	31	300	Serine/threonine-protein kinase CTR1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005646429.1	0.0	hypothetical protein COCSUDRAFT_56332
TrEMBL	I0YU16	0.0	I0YU16_COCSC; Uncharacterized protein
STRING	XP_005646429.1	0.0	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	6e-14	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	17040077

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]