PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28677.4 Da PI: 8.6326 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 41 | 86 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+teEd +l ++v ++G ++W++I+r++ gR++k+c++rw + PK29071.1 41 KGPWSTEEDRILTRLVDRYGARNWSLISRYIK-GRSGKSCRLRWCNQ 86 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 6e-18 | 95 | 137 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ PK29071.1 95 PFSPAEDETILAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 137 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.753 | 36 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-31 | 38 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 40 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-17 | 41 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 42 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-14 | 43 | 85 | No hit | No description |
SMART | SM00717 | 1.3E-15 | 92 | 140 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.269 | 93 | 142 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-14 | 95 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-12 | 95 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEAMNYNRCT SSTTSSSDSS SSESSGNNKV PRNGNKPERI KGPWSTEEDR ILTRLVDRYG 60 ARNWSLISRY IKGRSGKSCR LRWCNQLSPS VEHRPFSPAE DETILAAHAQ YGNRWATIAR 120 LLPGRTDNAV KNHWNSTLKR RAREAHQMED EGNQNTMSCG TGFSRGEANG SLPFGNTSNS 180 ITNNNSDNNV NGHSSPMSVE NDPPTALTLA PPGRGGDVMP EERRESFTAG FWDVMRDVIA 240 REVREYVSTT LSDNSGFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-41 | 37 | 142 | 3 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885414.1 | 1e-100 | transcription factor MYB44-like | ||||
Refseq | XP_021819388.1 | 3e-99 | transcription factor MYB44-like | ||||
TrEMBL | A0A2P5DDL4 | 1e-118 | A0A2P5DDL4_TREOI; MYB transcription factor | ||||
STRING | EMJ25026 | 1e-96 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 9e-57 | myb domain protein 77 |