PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26960.5 Da PI: 9.5036 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.3 | 8.3e-42 | 5 | 137 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrF Pt+eel+++yL++k+eg++ +l++ vi+ + iy+++PwdLp+ +++++ ++++fF+ r++++a+g r++r t+sgyWkatg+ v+s PK29014.1 5 PGFRFYPTEEELISFYLHNKLEGEREDLNRvinrVIPLLPIYEFNPWDLPRysgvACQGDPEQCFFFIARQESEARGGRPSRLTESGYWKATGSPSYVYS 104 9************************555542222567778**********54665555577799************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++ +glk+t+vfy+grap+g+kt+W m+ey+ PK29014.1 105 SRNRIIGLKRTMVFYNGRAPHGTKTQWKMNEYK 137 ********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.389 | 3 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-21 | 5 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-44 | 5 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
KSRIPGFRFY PTEEELISFY LHNKLEGERE DLNRVINRVI PLLPIYEFNP WDLPRYSGVA 60 CQGDPEQCFF FIARQESEAR GGRPSRLTES GYWKATGSPS YVYSSRNRII GLKRTMVFYN 120 GRAPHGTKTQ WKMNEYKAIQ GEPTTTPSAT ISHLPLLRQE FSLCRVYKKT KCLRAFDRRP 180 TREEIITINP TTTTTTLDHH HHQHQPSSLP PQWWPAFSKC GERVLEHSNF D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-30 | 5 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-30 | 5 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-30 | 5 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-30 | 5 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-30 | 5 | 169 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-30 | 5 | 169 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-30 | 5 | 169 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023884559.1 | 1e-98 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-69 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2P5DXN8 | 1e-118 | A0A2P5DXN8_PARAD; NAC domain containing protein | ||||
TrEMBL | A0A2P5EBH1 | 1e-118 | A0A2P5EBH1_TREOI; NAC domain containing protein | ||||
STRING | XP_008243510.1 | 1e-95 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-72 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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