PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28558.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 493aa    MW: 54476.2 Da    PI: 8.2425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28558.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000345778223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C+ Cgk F +   L  H+ +H
  PK28558.1 57 VCKECGKGFQSMKALCGHMASH 78
               6******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0365678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6165683IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-45781IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
PfamPF139121.8E-65880IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-5332355No hitNo description
SMARTSM003551.2333355IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-6333357IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286333360IPR007087Zinc finger, C2H2
PROSITE patternPS000280335355IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-5411438No hitNo description
PROSITE profilePS501578.787416438IPR007087Zinc finger, C2H2
SMARTSM003550.36416438IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8416438IPR007087Zinc finger, C2H2
PROSITE patternPS000280418438IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MECSTLPDFS VRMNHKDSES EAGKQPGYVL RENPKKSRRF ADSSGGGGGV LLKELNVCKE  60
CGKGFQSMKA LCGHMASHSD KEKLVINQKF EQYLGTNEKP KLIMDSHSDT ETSGPMQNRV  120
SKRIRYKTLD VYSYLGNACS SVSGIEQEQQ EVAISLMLLS RDSGHKGGLN SVGESSDNNS  180
VVLEAKSSSI DMMMISGKKV VSSSISNLDE FVGTKRASDG ELKSSKYVSA SENSDSGYFR  240
NGPKKIESDV SVDGFLRNGD FKKLESRSGF GKNLLDEDAK DQVERGSLKY ELRKRTRNGL  300
YTPESLMKAC KNEANWSSSN GQICTSNGQK NKYECLTCKK TFHSHRALGG HRANHSKING  360
CSESICESEE NSIAMAISPI QIANTKKKLI ENGTRKTQIK EYFPERKPIS KKSKGHECPI  420
CFRIFKSGQA LGGHKRSHFV GGRETNAMVI RQEPLDPEPE PEPEPVTEVT VLFDLNLPAT  480
EEDTNEDVGF VAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109363.11e-178uncharacterized protein LOC21390076
TrEMBLA0A2P5E2900.0A0A2P5E290_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010109363.11e-177(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-51C2H2-like zinc finger protein