PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28434.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 339aa    MW: 38374.9 Da    PI: 7.4603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28434.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09155202455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  PK28434.1 155 SHSLAERVRREKISERMKMLQKLVPGC-----EKvTGKALMLDEIINYVQSLQ 202
                8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17149218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.14E-11149206No hitNo description
Gene3DG3DSA:4.10.280.103.1E-17151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDHNNNNNHF YSSSSSSDHH NHNHNHNHDH DDDEPNSSVT CKKQSNTTES SISGEQVTQK  60
ILPNKRKIRN NNNASFSNST THSKDNNNND HGRSGTRGKR QKNCSGDSGK LLGKKEENSN  120
NNNNNNNKKK KCEEQETPPS GYIHVRARRG QATDSHSLAE RVRREKISER MKMLQKLVPG  180
CEKVTGKALM LDEIINYVQS LQNQVEFLSM KLASLNPMFY DFGMDLETFL VRPEGLNSNN  240
NNNMGSEIPS VPPPPCNQSQ LTAFSLSDNI TATTTNFPIT ANNNYPLIMD YNNLQQAHHR  300
PTNTFINSHD NIGTVLWDME DQRQSFLNPS EFNNLCSFN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408784e-92EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093954.24e-99transcription factor bHLH137
TrEMBLA0A2P5FD211e-123A0A2P5FD21_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010093954.14e-99(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-52bHLH family protein