PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28167.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26594.4 Da    PI: 9.9182
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28167.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien + rqvtfskRr g++KKA ELS+LCdae+a+i+fs+tgkly y++
  PK28167.1  9 KKIENITARQVTFSKRRRGLFKKALELSTLCDAEIALIVFSTTGKLYHYAT 59
               68***********************************************86 PP
2K-box39.52.4e-14851711097
      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 +   e+ ++ +a Lkke+e+   e+Rh++Ge+L++Lsl+eL++Le+ ++ sl+++ + K++  l++i  lqk   el e+n++ ++k
  PK28167.1  85 PSDMLENERKRYALLKKELEKKTMELRHIMGENLQELSLEELKKLEKSVHISLSRVNEIKDQSNLKEITFLQKG-IELLEDNQRVQQK 171
                45567889999************************************************************975.5555666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.01E-38374No hitNo description
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1087171IPR002487Transcription factor, K-box
PROSITE profilePS5129710.89989180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTRQKIEIKK IENITARQVT FSKRRRGLFK KALELSTLCD AEIALIVFST TGKLYHYATS  60
SMPQVIERHK SHSDQNRLHN KLSQPSDMLE NERKRYALLK KELEKKTMEL RHIMGENLQE  120
LSLEELKKLE KSVHISLSRV NEIKDQSNLK EITFLQKGIE LLEDNQRVQQ KSNVVKVGDA  180
FEKCLIDSTS TKSHIFNQPQ PQDHQNQSQN QNHFDSSDTT LKLGLPFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19174174MEF2C
5f28_B3e-19174174MEF2C
5f28_C3e-19174174MEF2C
5f28_D3e-19174174MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020325.14e-73MADS-box protein AGL24 isoform X1
TrEMBLA0A2P5ALU67e-84A0A2P5ALU6_PARAD; MADS-box transcription factor
STRINGXP_010277487.17e-65(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-38MIKC_MADS family protein