PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28164.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 228aa    MW: 26450 Da    PI: 8.9409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28164.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-093341748
                     HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +G g W++ a+  g++Rt+k+c++rw++yl
        PK28164.1  3 ANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 34
                     78****************************97 PP
2Myb_DNA-binding52.79.9e-174083146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T eE++++ ++++++G++ W++Ia++++ gRt++++k++w++
        PK28164.1 40 RGNITNEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 83
                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071722136IPR001005SANT/Myb domain
PROSITE profilePS512949.331134IPR017930Myb domain
PfamPF002495.7E-8234IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-21281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-14241IPR009057Homeodomain-like
CDDcd001676.92E-4234No hitNo description
PROSITE profilePS5129424.6243589IPR017930Myb domain
SMARTSM007171.1E-143987IPR001005SANT/Myb domain
PfamPF002492.2E-154083IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-244290IPR009057Homeodomain-like
CDDcd001672.46E-114483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
XIANHGEGVW NSLAKAAGLK RTGKSCRLRW LNYLRPDVRR GNITNEEQLI IMELHAKWGN  60
RWSKIAKHLP GRTDNEIKNY WRTRIQKHMK QADHHHHNQN NNNTQNHQYH HHPHHQINVN  120
NSNDNNNNNQ MMMMMMNDQG STSSSQVSSS TIDAMESYSP PPLISSSSSS ISYQGINYMD  180
NHHTNNNLVN NYPMPMALPH HPVVSSNIDQ TYNWSMDDFW SMQLLNSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1828922108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108787.12e-76myb-related protein 305
SwissprotQ9LK956e-67MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A2P5BUN15e-99A0A2P5BUN1_PARAD; MYB transcription factor
STRINGXP_010108787.18e-76(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.17e-60myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]