PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27491.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 489aa    MW: 52581.6 Da    PI: 6.0887
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27491.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-27198252156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  PK27491.1 198 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 252
                5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.152195254IPR017930Myb domain
SuperFamilySSF466893.94E-18196255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26196255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26198252IPR006447Myb domain, plants
PfamPF002495.5E-8201250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MIIGMLAVSS LRDTYKDENQ GGEAMETSNH INFSINGGDG FPDFADCIDF DDLFIGINVD  60
GDVLPDLEMD PEILADFSAE DYNSDDMNTS PLSAEKSADI DDNNVSSINS AITSTTTTTT  120
TTTHAEEEDN NNNRKIKSTT AETEDDKDSG SGSGSVTGGD VASANNNKEA SDNKGGGKKS  180
SSSTTAQSKN NNSQGKRKVK VDWTPELHRR FVQAVEQLGV DKAVPSRILE LMGIDCLTRH  240
NIASHLQKYR SHRKHLLARE AEAASWSQRR QMFGAAPGGG GGAVAGKRDV SPWAVAPTMG  300
FPQQAVVPQP PPVPMHPHFR PLHVWGHPTV DQSLMHVWPP KHLPHSPSHH PPPPPPAWQP  360
AVPTPPPLHD PSYWHSHPHR VPSALTPGTP CFPQPMATPR FSTPAVPGIP PGHAMYKVDA  420
GIGNLTPGQS GPHPLFDFHP SKESVDEAIG DVLAKPWLPL PLGLKPPSMD SVMGELQRQG  480
VPRIPPSCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16195250257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093955.11e-162transcription activator GLK1 isoform X2
TrEMBLA0A2P5B6N00.0A0A2P5B6N0_PARAD; Octamer-binding transcription factor
STRINGXP_010093955.11e-162(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.19e-79GBF's pro-rich region-interacting factor 1