PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27213.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 307aa    MW: 34564.6 Da    PI: 9.947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27213.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-072570346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+ E + + +a + + ++   +W+ +a++++ g++ ++++ ++  
        PK27213.1 25 NWTAAENKAFENALAVFDKEtpeRWHNVAAMIP-GKSVEDVIKKYKE 70
                     8*****************99*************.*********9975 PP
2Myb_DNA-binding48.22.5e-15133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        PK27213.1 133 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 177
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.7372176IPR017884SANT domain
SMARTSM007172.0E-82274IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-92478IPR009057Homeodomain-like
PfamPF002491.4E-52570IPR001005SANT/Myb domain
CDDcd001675.11E-72571No hitNo description
PROSITE profilePS5129420.955126182IPR017930Myb domain
SuperFamilySSF466895.46E-17128181IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18129181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-13130177IPR009057Homeodomain-like
SMARTSM007172.7E-13130180IPR001005SANT/Myb domain
CDDcd001671.37E-11133178No hitNo description
PfamPF002495.4E-13133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEILSSPASY ISNSNWLLQD GKSTNWTAAE NKAFENALAV FDKETPERWH NVAAMIPGKS  60
VEDVIKKYKE LEFDVSNIEA GLIPIPGYTS STFTLDWVNN GRAYDGFKQS YGFGGKRSSS  120
TRPADQERKK GVPWTEEEHK LFLMGLKKYG KGDWRNISRN FVVTRTPTQV ASHAQKYFIR  180
QLSGGKDKRR ASIHDITTVN LNDTRTPSPD EKRRPPSPDH SNMVSQQPNS AAMSRTPFQW  240
NQPSNGGVNM GFHMTNGNIF MSNPYGVNTY GLKVQGHNLH RAAVHDSYFG PQSMAFQMQS  300
TQHYPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-162191676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026725.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-147DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5CP360.0A0A2P5CP36_TREOI; GAMYB transcription factor
STRINGPOPTR_0009s04730.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-107Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]