PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27158.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 149aa    MW: 17472.6 Da    PI: 9.6043
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27158.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-212381551
               HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kRrng+lKKA+ELS+LCda+v +iifsstgkly+yss
  PK27158.1  2 KRRNGLLKKAKELSILCDAQVGLIIFSSTGKLYDYSS 38
               9**********************************96 PP
2K-box85.98.2e-29621481197
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 ++ + +q+e+a L+++++ Lq+ +R+l+Ge+L+ Ls k+Lq+Le+qLe slk iR+kK+++l+++i+el kk + +++en +L kk
  PK27158.1  62 ISEVKFWQREAATLRQQLQYLQECHRQLMGEELSGLSTKDLQNLENQLEMSLKGIRTKKDQILTDEIRELNKKGNLIHQENIELYKK 148
                57889******************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.437140IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-13139IPR002100Transcription factor, MADS-box
PfamPF003192.4E-17236IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-23260IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-17217IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-171738IPR002100Transcription factor, MADS-box
PfamPF014866.7E-2763148IPR002487Transcription factor, K-box
PROSITE profilePS5129715.24165149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
XKRRNGLLKK AKELSILCDA QVGLIIFSST GKLYDYSSSS MKSVIERYNK MKEEHHQLLN  60
PISEVKFWQR EAATLRQQLQ YLQECHRQLM GEELSGLSTK DLQNLENQLE MSLKGIRTKK  120
DQILTDEIRE LNKKGNLIHQ ENIELYKKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-142602381MEF2C
5f28_B9e-142602381MEF2C
5f28_C9e-142602381MEF2C
5f28_D9e-142602381MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031735.15e-93MADS-box transcription factor 23
SwissprotQ6EP491e-75MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2P5F7H74e-95A0A2P5F7H7_TREOI; MADS-box transcription factor
STRINGXP_010112258.11e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-75AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]