PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26086.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 378aa MW: 41383.2 Da PI: 7.7942

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26086.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.8e-39	64	121	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprCds+ntkfCyynny+lsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ PK26086.1 64 ALKCPRCDSSNTKFCYYNNYNLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 121 689****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	64	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	65	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-33	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MGNCDNEKMV FISSSTTNEW PQNHPDDQNN ALNMASSAHH VRPTIEKQGQ EQLQQQQQNN 60 QGLALKCPRC DSSNTKFCYY NNYNLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRV 120 KRPSSGTNSD GSGANSSSSS ANNNFKNHGS VVHQPQTDLC SYSHMMRPLS YGLHINPSSA 180 DMSHVLPFSR FMNSTTSGYD LHDQPHLINA LGLGFSSSAG NINDSTDHNY QNDFSGNTTT 240 TTPKNIQDIV SSNSLFSTYN STFTASTTTP LSSVAGASPT ISSLFSSKFA NGGLKDSRGP 300 MNHFQPLTAP FEDLHIENAS AANCGGVEDL NLSNKEAVKL EDQGQQRRSD WNQTEKIGLS 360 SSDPSFYWNP TVAVGTNW

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MGNCDNEKMV FISSSTTNEW PQNHPDDQNN ALNMASSAHH VRPTIEKQGQ EQLQQQQQNN  60
QGLALKCPRC DSSNTKFCYY NNYNLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRV  120
KRPSSGTNSD GSGANSSSSS ANNNFKNHGS VVHQPQTDLC SYSHMMRPLS YGLHINPSSA  180
DMSHVLPFSR FMNSTTSGYD LHDQPHLINA LGLGFSSSAG NINDSTDHNY QNDFSGNTTT  240
TTPKNIQDIV SSNSLFSTYN STFTASTTTP LSSVAGASPT ISSLFSSKFA NGGLKDSRGP  300
MNHFQPLTAP FEDLHIENAS AANCGGVEDL NLSNKEAVKL EDQGQQRRSD WNQTEKIGLS  360
SSDPSFYWNP TVAVGTNW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890946.1	2e-94	dof zinc finger protein DOF1.4-like
TrEMBL	A0A2P5AMS6	1e-144	A0A2P5AMS6_PARAD; Zinc finger transcription factor
STRING	EOY28202	7e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	9e-34	Dof family protein