PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22709.8 Da PI: 8.6735 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r+da+ sl+yeA ar+rdPvyG+v++i++lq+q+ +l+aela++++ PK25573.1 18 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRRDAVVSLCYEALARLRDPVYGCVSHIFTLQHQVVNLQAELAYVQA 117 7***********************9989*********************************************************************998 PP DUF260 100 e 100 + PK25573.1 118 K 118 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.546 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-39 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
KMSSNGGSSG GSGGGGGPCG ACKFLRRKCV KGCIFAPYFD SEQGTAHFAA VHKVFGASNA 60 SKLLLRIPPH KRRDAVVSLC YEALARLRDP VYGCVSHIFT LQHQVVNLQA ELAYVQAKLS 120 TMQRLPPTQP PPQNLSPSYT DVVLNSNFSM SMQLDPFYHP QSSNEHTSLI INPGEDQPLY 180 DDDLQELGRQ LVSRCFPAGV KFRSNTSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-39 | 14 | 119 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-39 | 14 | 119 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019012.1 | 1e-87 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 4e-67 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A2P5B0A4 | 2e-96 | A0A2P5B0A4_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010092842.1 | 2e-83 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 6e-65 | LOB domain-containing protein 19 |