PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 25414.7 Da PI: 4.6686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.1 | 7.6e-28 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF Ptdeel+ ++L +kv + + ++i+ vd+ ++Pw++ +++++e+ ++yfFsk+ + ++t++gyWk+ +++++++ ++ PK25436.1 9 LPPGFRFCPTDEELILQFLYPKVFALPSAHPNIIPYVDLRLHQPWEFTgTALSSENMHYYFFSKTTE--------GKVTSNGYWKEMDMNEPIFVSgANN 100 79*************************999899**************95566566667788887644........568999*************987778 PP NAM 99 lvglkktLvfy......kgrapkgektdWvmheyrl 128 +vg+kk v+y +++ ++++t+Wvm+ey+l PK25436.1 101 KVGVKKYYVYYvtnhgyHQSPTSATETNWVMEEYNL 136 8**********99877667888899*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-33 | 6 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.702 | 9 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-20 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGDNQSVKLP PGFRFCPTDE ELILQFLYPK VFALPSAHPN IIPYVDLRLH QPWEFTGTAL 60 SSENMHYYFF SKTTEGKVTS NGYWKEMDMN EPIFVSGANN KVGVKKYYVY YVTNHGYHQS 120 PTSATETNWV MEEYNLCNNL ELMSTTICPT YKRRRKQKLD FKWVLCRVHE RKMEDISLKS 180 VQYEDDDNGT ELSCLDEMFL SALDDDDFEE ISMQILD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-20 | 7 | 172 | 18 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090830.1 | 5e-74 | NAC domain-containing protein 104 | ||||
TrEMBL | A0A2P5E7M9 | 1e-103 | A0A2P5E7M9_TREOI; NAC domain containing protein | ||||
STRING | XP_010090830.1 | 2e-73 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-43 | xylem NAC domain 1 |