PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25419.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 286aa    MW: 30304.1 Da    PI: 7.8069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25419.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10134178554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  PK25419.1 134 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 178
                99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15127188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-15131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7134178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
XQILGYPSFA SADNNLTPTD APPPPMMLHL SSADGPSHMP SVGGGGGAAA FPGSVFPLGL  60
SLEQSKAGFL KAEEASGSGK RFRDDLVDAT ASARGPSHLK NVFHGQPMPS TVAPHPPAMR  120
PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN KTDRAAMLDE IVDYVKFLRL  180
QVKVLSMSRL GGAGAVAPLV TDIPLSSAEE EGGGGEGGRN QPAWDKWSSD GTERQVAKLM  240
EENVGAAMQF LQSKALCIMP ISLASAIYHS QPPDSSSVKP ETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898025.11e-151transcription factor UNE12 isoform X2
SwissprotO227681e-115UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2P5FB521e-149A0A2P5FB52_TREOI; Basic helix-loop-helix transcription factor
STRINGevm.model.supercontig_52.971e-146(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]