PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK25213.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

TCP

Protein Properties

Length: 356aa MW: 37603.4 Da PI: 6.1662

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK25213.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.3	3.9e-32	68	144	3	71
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........s 71 ++k++++ hTkv+gR+RR+R++ caar+F+L++eLG+++d++ti WLl++a++ai+++tgt++++a PK25213.1 68 VAKRKSKHQHTKVEGRGRRIRMPPACAARIFQLTEELGLKSDGETIRWLLEKAEQAIIKATGTGTIPAiaisvggtL 144 689999*********************************************************88877333222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.96	71	127	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.3E-25	72	147	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDSNRETNEI IDANDDEQNI NTSNDISASE TXPTMIPMKE EISETEGELD DKSLSVVPIS 60 TSSFGAVVAK RKSKHQHTKV EGRGRRIRMP PACAARIFQL TEELGLKSDG ETIRWLLEKA 120 EQAIIKATGT GTIPAIAISV GGTLKIPTIS SARPNGEIIE VNSEKRRRKE SNSEFIDVRD 180 KASVSSGLAP ITPMAYGASD NGAQGLVPVW QAVTNNAAGA GHFIMFPNSG GAVPGKQIKP 240 NTXAFPAGDG ATTSFFGVQT RPISNFVSAL QPVHLRDPQA SAGSVSSNVT PTTGAGGSGS 300 SNMGPILSSS SVVVTTSTNS DNNGTDSTTT TQMLRGFSLE IYDKKERPLM GRSQQT

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDSNRETNEI IDANDDEQNI NTSNDISASE TXPTMIPMKE EISETEGELD DKSLSVVPIS  60
TSSFGAVVAK RKSKHQHTKV EGRGRRIRMP PACAARIFQL TEELGLKSDG ETIRWLLEKA  120
EQAIIKATGT GTIPAIAISV GGTLKIPTIS SARPNGEIIE VNSEKRRRKE SNSEFIDVRD  180
KASVSSGLAP ITPMAYGASD NGAQGLVPVW QAVTNNAAGA GHFIMFPNSG GAVPGKQIKP  240
NTXAFPAGDG ATTSFFGVQT RPISNFVSAL QPVHLRDPQA SAGSVSSNVT PTTGAGGSGS  300
SNMGPILSSS SVVVTTSTNS DNNGTDSTTT TQMLRGFSLE IYDKKERPLM GRSQQT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106814.1	1e-115	transcription factor TCP19
TrEMBL	A0A2P5ER99	1e-137	A0A2P5ER99_TREOI; TCP transcription factor
STRING	XP_010106814.1	1e-114	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-54	TCP family protein