PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24751.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 477aa    MW: 54147.2 Da    PI: 4.4516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24751.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.64.3e-481174762374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +c ea+++++ el + +L r+ +++sp g++++R+ + + + + ++  +     y      ++s    +++  a+k+f + +P++kf+++taN+a
  PK24751.1 117 FHLLKACGEAIEKEQSELKDVILRRIGDRVSPVGKALERVGFILSQQIDTKFID-----Y----LIQES---LKNSNPAFKAFCQFFPYVKFAQFTANSA 204
                689****************************************99988888888.....2....22222...4556678999****************** PP

       GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpg 199
                Ilea+  + +++Hi+Dfd+ +GlQW   ++a +sR +   sl++T +  ++++++   e+t+++L + A++ g++++++ + +++ +++++  + r   +
  PK24751.1 205 ILEATPDDvDTLHIVDFDMREGLQWSQAIEAASSRWK---SLKLTSIRLAKEEEEVDFEQTKRQLLDHASSYGLELKIQEIgIEDLVSEVKKGKKRGCGK 301
                *****9999************************9965...6********9999***************************9555566666666666666* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgr 292
                E la n+++ + ++    + +++   e+L+l k+l   +  ++v+++ e   ++ ns++F + f   + +y al+ds+e+++p++  e+r+++E  ++++
  PK24751.1 302 EFLAFNIAVGMSHMR--ITRSRKLVMEFLNLAKDLlssNKGIIVLSDGEpsENLkNSTNFTQFFDGHVLHYQALLDSIESTFPAHLsEARMTMETLFVAP 399
                ********9998886..344444577*******984434459999999865556899************************9987559************ PP

       GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                 +++ v  ++ e  e +e +    +   e+G+k+ +ls++  ++ak +++  +   y++ +e    +++ l Wk+ pLv +SaW+
  PK24751.1 400 FVSSSVWSQKWE--EIREGF----HLKAEFGLKEWRLSNESLMEAKEMVSDNN--CYEIRSEgvnGNEASLNWKGVPLVRISAWT 476
                *********999..555555....456789*********************99..455554434377888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.34990455IPR005202Transcription factor GRAS
PfamPF035141.5E-45117476IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
PLVYHDMNNI SCWNNNNQVE EYCMEFDDHQ SLQVLPMMED FPMELLEQVF EPQLSGEFEA  60
IYGSLMEDES VGSLQYSSPS SSTSSSSSPS IVDVTSVQPV LFLPEQDMEI ENELGLFHLL  120
KACGEAIEKE QSELKDVILR RIGDRVSPVG KALERVGFIL SQQIDTKFID YLIQESLKNS  180
NPAFKAFCQF FPYVKFAQFT ANSAILEATP DDVDTLHIVD FDMREGLQWS QAIEAASSRW  240
KSLKLTSIRL AKEEEEVDFE QTKRQLLDHA SSYGLELKIQ EIGIEDLVSE VKKGKKRGCG  300
KEFLAFNIAV GMSHMRITRS RKLVMEFLNL AKDLLSSNKG IIVLSDGEPS ENLKNSTNFT  360
QFFDGHVLHY QALLDSIEST FPAHLSEARM TMETLFVAPF VSSSVWSQKW EEIREGFHLK  420
AEFGLKEWRL SNESLMEAKE MVSDNNCYEI RSEGVNGNEA SLNWKGVPLV RISAWTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1218447580374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093554.11e-173nodulation-signaling pathway 2 protein
TrEMBLA0A2P5F9780.0A0A2P5F978_TREOI; GRAS transcription factor
STRINGXP_010093554.11e-172(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-21RGA-like 2