PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK24260.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 351aa    MW: 39676.9 Da    PI: 4.9692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK24260.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv +v+++G  +W+  ++  g++R++k+c++rw +yl
        PK24260.1 16 KGTWTPEEDRKLVAYVTRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYL 63
                     799*****************99************************97 PP
2Myb_DNA-binding50.54.9e-1669113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T eE+e + ++++ lG++ W++Ia++++ gRt++++k++w++ 
        PK24260.1  69 RGNYTHEEEETITRLHASLGNK-WSAIAAELP-GRTDNEVKNYWHTN 113
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-22766IPR009057Homeodomain-like
PROSITE profilePS5129415.4241163IPR017930Myb domain
SuperFamilySSF466891.04E-2813110IPR009057Homeodomain-like
SMARTSM007173.5E-111565IPR001005SANT/Myb domain
PfamPF002495.6E-141663IPR001005SANT/Myb domain
CDDcd001674.24E-91863No hitNo description
PROSITE profilePS5129423.17764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2467117IPR009057Homeodomain-like
SMARTSM007173.1E-1568116IPR001005SANT/Myb domain
PfamPF002491.5E-1469113IPR001005SANT/Myb domain
CDDcd001674.65E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
XKMVRTPCCD QNGMKKGTWT PEEDRKLVAY VTRYGCWNWR QLPKFAGLKR CGKSCRLRWM  60
NYLRPNVKRG NYTHEEEETI TRLHASLGNK WSAIAAELPG RTDNEVKNYW HTNLKKRQKQ  120
NSSSVEISQL EKSSSSSTAS IITTDYCLSP NNVDDYYSSE IQEVLMEPNN NNNNNSNEAM  180
RSSNSTSRSS QLETVVNKNN INNVHSPLSP QPSSSGSEIS TTTTDTSTST SRASTDNNNN  240
NATTETTTNY STNYFVGDLS YNYNDLFEDD QALQHELFSD SFWTEPFLAD HNSYIPTTTT  300
HDHDYLITNA NSLMDSDDLL SPTLDSILLF TSNSSTSTAG YFYEENLVGL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26161177107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095861.12e-95transcription factor MYB14
TrEMBLA0A2P5D1161e-102A0A2P5D116_TREOI; GAMYB transcription factor
STRINGXP_010095861.18e-95(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.12e-58myb domain protein 34