PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23205.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 216aa    MW: 24254.2 Da    PI: 9.3891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23205.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-092470654
               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               + +E++RR +++   ++L +l+P+     p++ l+  + L +A  YI +L
  PK23205.1 24 KTIEKNRRIHMKGLCFKLASLVPShH---PKEMLTQQDQLDLAASYITQL 70
               689*********************55...9999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.22E-51774No hitNo description
PROSITE profilePS5088810.2011870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-112184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-102283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-62470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00392476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
GKIFIFRMKK SSGETTSSNK LDRKTIEKNR RIHMKGLCFK LASLVPSHHP KEMLTQQDQL  60
DLAASYITQL RERIDKLKKR KEEAIMMPPP TSSIASKVGI NSGGCSSSSG GDNNNNNMMI  120
NRNYVVLDDA MRPTTTKMTM LPVIELKDMG CSIEVVLISG LHKNFMLYEI ISVLEQEGAE  180
VVSASLSVVD DKIFHTLHAQ VHNPHIYIIN LIYTHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479DKLKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101195.26e-69transcription factor bHLH162
TrEMBLA0A2P5F6H23e-77A0A2P5F6H2_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010101195.12e-68(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-25bHLH family protein