PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23084.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 231aa    MW: 26410.9 Da    PI: 6.7093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23084.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.5e-072591655
               HHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-.STCHHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPkas................kapskK.lsKaeiLekAveYIksLq 55
               ++ Er+RR++++  +++L +llP+                  + +s    s  + L +A +YIk+Lq
  PK23084.1 25 KITERNRRNQMKILYSNLNSLLPPHNnnsqqqqqqqqqqqtkRDSSVSsTSLPDQLDEAAKYIKKLQ 91
               689*********************555*********9988884444444888899***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5061990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-724105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-825109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDDDVVVNPS SSSRTNINNN GHDRKITERN RRNQMKILYS NLNSLLPPHN NNSQQQQQQQ  60
QQQQTKRDSS VSSTSLPDQL DEAAKYIKKL QISIERMKEK RNSLLIDHNH NHNHNYDYDH  120
SNGNGNGNNG DGDDMKLPHI EIHEMGLAVE IVLITGLDFK SLFYQTIRIL HEEGFDILNA  180
SFYVSQNTVF HTIHSQKGEF ASATVGASSR ISERLNNFIN EAITNNNNYN H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868749.15e-59transcription factor bHLH162 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-26bHLH family protein