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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK22876.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 295aa MW: 34943.9 Da PI: 6.0636 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 72.9 | 5.6e-23 | 32 | 113 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W ++e+++ i++r+e+e+++ +k+ k lW++vs+km ergf r++ qCk+kw+nl +ryk ++++ ++ ++cp+f++l+
PK22876.1 32 QWGQEETKEFIKIRTELERDSALTKRSKVLWDAVSSKMLERGFIRTSDQCKCKWKNLLNRYKGQETSDPEN----GRQCPFFEELH 113
7**************************************************************99999974....678******98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50090 | 8.014 | 25 | 89 | IPR017877 | Myb-like domain |
| Gene3D | G3DSA:1.10.10.60 | 7.0E-4 | 30 | 90 | IPR009057 | Homeodomain-like |
| Pfam | PF13837 | 4.7E-21 | 32 | 115 | No hit | No description |
| CDD | cd12203 | 2.14E-19 | 32 | 94 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 295 aa Download sequence Send to blast |
XYEWGDDEGR RTTTSTRTMM VMMGRSAQGQ GQWGQEETKE FIKIRTELER DSALTKRSKV 60 LWDAVSSKML ERGFIRTSDQ CKCKWKNLLN RYKGQETSDP ENGRQCPFFE ELHALFSERE 120 KNMQRLLLET EMGSPRSRKK MKGPSNAGQS SDEFSENEEN DKEGIDEETP TTTTSTRRKR 180 KGEKIALDKS LKATNAAAAA SMSGETDIRE MLKQFFEQQQ MIEKQWMDMM DRRAYEQQLF 240 EQEWRQSMEK LERERLMVEQ SWREREEQRR IREESRAERR DALLTSLLNN LLHEN |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010112997.1 | 1e-128 | trihelix transcription factor GT-3b | ||||
| TrEMBL | W9SMK5 | 1e-127 | W9SMK5_9ROSA; Trihelix transcription factor GT-3b | ||||
| STRING | XP_010112997.1 | 1e-127 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF1781 | 33 | 85 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G01380.1 | 1e-26 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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