PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22178.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 236aa    MW: 26921.1 Da    PI: 4.3244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22178.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161958647
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     + E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
        PK22178.1 19 EAEEQLVIDLHARLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 58
                     67***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-16367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-24464IPR009057Homeodomain-like
PROSITE profilePS5129426.642963IPR017930Myb domain
SMARTSM007172.1E-141361IPR001005SANT/Myb domain
CDDcd001678.02E-111859No hitNo description
PfamPF002492.7E-141958IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
XLRWTNYLRP DLKRGLLNEA EEQLVIDLHA RLGNRWSKIA AKLPGRTDNE IKNHWNTHIK  60
KKLVKMGIDP VTHEPLNNNN NDNSIIPNEE IIKPCTATTT NNSIDQKTEE EEEEEQEKGI  120
IDQPKSNKSI KTENSSSTDN ESSQPSDLIN MYDHDPLMSY LLSENFLIED SSSWDFPEAT  180
TTTTTTSTTT ADNYSDHNNH FGVYSSSSSE ETSTWLLESN KDLLGDDGEL WAWFLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1536348108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101097.15e-64protein ODORANT1
SwissprotQ50EX62e-47ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2P5EVA63e-87A0A2P5EVA6_TREOI; MYB transcription factor
STRINGXP_010101097.12e-63(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.16e-43myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]