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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK22174.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | MYB | ||||||||
| Protein Properties | Length: 967aa MW: 107418 Da PI: 5.5852 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 58.1 | 2e-18 | 43 | 88 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g+WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l
PK22174.1 43 GKWTAEEDEILRRAVHHYKGKNWKKIAECFK-DRTDVQCLHRWQKVL 88
89****************************9.************986 PP
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| 2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 94 | 140 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEde +v++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
PK22174.1 94 KGPWSKEEDEVIVELVNKYGAKKWSMIAEALP-GRIGKQCRERWHNHL 140
79******************************.*************97 PP
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| 3 | Myb_DNA-binding | 41.9 | 2.3e-13 | 146 | 188 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ +WT+eE++ l++a++ +G++ W+ + ++ gR ++ +k++w+
PK22174.1 146 KEPWTQEEELTLIRAHQVFGNK-WAELTKFLP-GRADNAIKNHWN 188
679*******************.*********.***********8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 18.288 | 37 | 88 | IPR017930 | Myb domain |
| SMART | SM00717 | 5.6E-16 | 41 | 90 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.9E-16 | 42 | 88 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 43 | 100 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.95E-16 | 43 | 98 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 6.70E-15 | 44 | 88 | No hit | No description |
| PROSITE profile | PS51294 | 31.54 | 89 | 144 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.59E-31 | 91 | 187 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.5E-17 | 93 | 142 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.36E-15 | 96 | 140 | No hit | No description |
| Pfam | PF13921 | 7.0E-17 | 97 | 155 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 3.0E-27 | 101 | 148 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 7.2E-12 | 145 | 193 | IPR001005 | SANT/Myb domain |
| PROSITE profile | PS51294 | 17.557 | 145 | 195 | IPR017930 | Myb domain |
| CDD | cd00167 | 5.09E-9 | 148 | 188 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 149 | 195 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 967 aa Download sequence Send to blast |
MTRLRRTSVQ RPGLLDAPSP DEVQKIKPLR GRTSGPTRRS TTGKWTAEED EILRRAVHHY 60 KGKNWKKIAE CFKDRTDVQC LHRWQKVLNP ELIKGPWSKE EDEVIVELVN KYGAKKWSMI 120 AEALPGRIGK QCRERWHNHL NPAINKEPWT QEEELTLIRA HQVFGNKWAE LTKFLPGRAD 180 NAIKNHWNSS VKKKLETYLA SGLLDQFQGL PNVGNLNLAS SLGVQPNVNR VEEEDTSECS 240 QSSNGVNCTQ FEPITETGAS SGREYYKTQE SSCSMEHDLE QYAMCGNAPH QFNNIYFGSH 300 KLSRMAHLSV PEESSEQLGT SGLCITTNEN HAGSICNSVG FNSADTVDDL LIDSVKLERL 360 LISENDCSNT LFSESSAPGC FPQDIEENKS SIIGEDGARS SSHCRVDIDN SFPAQSSPLK 420 SCAQGKGVSE PTMELDAIPI SRDDFICVDS PTGETGKSDK YPKLDKGKNA PKLIAVDIFS 480 KGNSDSSETS LSMHEKKLPS KANSSQTVPS IDDTTTQTEH QDLATLSYDR PHFPSIDIPF 540 FNCDLTESNG ELQHNYSPFG MRQLLLPSAS LSSPRCLLLD SPIRDSTPRA TLKRAKSFNS 600 STSMTRKRFY EMLSPIKERK SEIKFDRDSN MRSSSFSCTF SSLESIFDEN GACRMSISSI 660 EDSMLDETSV DYAFEEGTKR VDKLDTRISE KIESITNSSD KLAENTKVDA EAKVDNNDTT 720 FKQQHADVLI EHLDNHLIIS PRYGQANRRL AVAVLSPRSR YTRKLDRLDQ GSSFDSVDGK 780 DEKGKVPVTS VECPSKAPEE ITSGTAGNDA DIQSIYMIGE SPGTQRDLES PSAWKLLRSF 840 LHGPGVDADI PVMDLEYIMS PGMRSYEACG LMRQMNPGEV LASDQNHPEI SSKTMAAFEP 900 ILFGKGDYFL HDEKENLPPN VHLIDGRVLD FDGCDGTPGK EMENKKKFAA GTSSSSSSSS 960 HLLKSCR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 6e-66 | 43 | 195 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 6e-66 | 43 | 195 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024032317.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
| Refseq | XP_024032320.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
| TrEMBL | A0A2P5FT15 | 0.0 | A0A2P5FT15_TREOI; Octamer-binding transcription factor | ||||
| STRING | XP_010089227.1 | 0.0 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3727 | 33 | 62 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G11510.2 | 2e-97 | myb domain protein 3r-4 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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