PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21687.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 689aa    MW: 75975.8 Da    PI: 9.6337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21687.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07590639147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        PK21687.1 590 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 639
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.53E-7395484IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.654585644IPR017930Myb domain
SMARTSM007173.5E-7589642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10590640IPR009057Homeodomain-like
SuperFamilySSF466893.41E-15591672IPR009057Homeodomain-like
CDDcd116601.01E-16591641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPAMP RATRSARRRG TVKKRAEENQ MCAFDLLATV AGKLLLEKES  60
TPASSNTSNQ KDKCIIVDQD RHDGNVALKV ETCDQGSCDR KPFVSEQVSQ APSVNHSSKK  120
PSFPKNDDHS SFTSIMTTSN CSERLVAINS DASKIKNEVG SSCSQIEGLS MYRESGDCKL  180
EGETKTLVKD ESNNTGKVLI GTAADRRSSE YPTVFKGKPL VLPTSDSSAK APLCGDHVPQ  240
TSLPSTRDDV KVVSRDDDEK SSGCTHPSTT TRYLKRVPRI GDRRIRKILA SKYWKVGSKF  300
KDETLSSPDG NNKPSCRGRK DCYKRQRTQM TVPFKKRKLF DHSSVWASDG GTNSEGFFNS  360
IEKSIGDASD SCAKLQGGTG TSCSVAGQRT SFQRRDSHVK LRIKSFRVPE LFIEIPETAT  420
VGSLKRTVMD AVTAILGGGL HIGVLLQGKK VRDDNVTLLQ SGISQDKQLD ALGFTLEPNS  480
PQTPPPMCSG DSPHLLSGDA PEILARYPPN QEMVGHTNAN VLPEPHVANL SNFVESDHDS  540
TPSPTDTSVD KSTIDSKALV TVPEMNAEAL SVVPALRKSK RSDMAQRRIR RPFSVTEVEA  600
LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQDLL  660
DRVLTAHAYW SQHQAKQQLK QQPETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-565746801107Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028075.10.0telomere repeat-binding protein 5 isoform X1
TrEMBLA0A2P5D6E60.0A0A2P5D6E6_TREOI; Octamer-binding transcription factor
STRINGXP_010106503.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-144TRF-like 2