PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21494.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SRS

Protein Properties

Length: 375aa MW: 40707.9 Da PI: 7.3511

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21494.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.3	3.5e-67	150	296	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 sg++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa+krrerqq+++++ss + ++++kr r++++++ +s+++ +++++ le+ PK21494.1 150 SGGVSCQDCGNQAKKDCVHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQHQQQLSSLQ-----QQQPKRLRDSNNNALIISSNSSRLQTTHSGGLEV 244 7899*********************************************9999886555.....4455555555444443333333344445568999 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+ev+s+avfrcv+vss++d+++++aYqtav+igGhvfkGiLyd+Gle+ PK21494.1 245 GNFPSEVNSQAVFRCVKVSSMEDNDDQYAYQTAVNIGGHVFKGILYDHGLET 296 9**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-63	152	295	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.3E-28	154	196	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.1E-27	247	294	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
XNNNNNNSNN NNIQAHPETF FWYNVKPHNN NNDHQTNNNN TSTTFELWQQ EQQAALLHLQ 60 TIPTRPHHHH HSHHHHQDLY SSAAALGVGP SSYRSLGAGA AAGGGGSITV DSSDEQHHES 120 TSAARFMMMR SSNSSGGVGG GSGGLLGSSS GGVSCQDCGN QAKKDCVHMR CRTCCKSRGY 180 DCQTHVKSTW VPASKRRERQ QHQQQLSSLQ QQQPKRLRDS NNNALIISSN SSRLQTTHSG 240 GLEVGNFPSE VNSQAVFRCV KVSSMEDNDD QYAYQTAVNI GGHVFKGILY DHGLETNYNN 300 MVGETSSGGG GGNNQSVQPL DLITVAATAT TAEASPSVGA FDPSSLYQQQ QQQQQQQQPL 360 NTYIAGTQFF LPPRS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

XNNNNNNSNN NNIQAHPETF FWYNVKPHNN NNDHQTNNNN TSTTFELWQQ EQQAALLHLQ  60
TIPTRPHHHH HSHHHHQDLY SSAAALGVGP SSYRSLGAGA AAGGGGSITV DSSDEQHHES  120
TSAARFMMMR SSNSSGGVGG GSGGLLGSSS GGVSCQDCGN QAKKDCVHMR CRTCCKSRGY  180
DCQTHVKSTW VPASKRRERQ QHQQQLSSLQ QQQPKRLRDS NNNALIISSN SSRLQTTHSG  240
GLEVGNFPSE VNSQAVFRCV KVSSMEDNDD QYAYQTAVNI GGHVFKGILY DHGLETNYNN  300
MVGETSSGGG GGNNQSVQPL DLITVAATAT TAEASPSVGA FDPSSLYQQQ QQQQQQQQPL  360
NTYIAGTQFF LPPRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010113475.1	7e-97	protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2P5FP06	1e-119	A0A2P5FP06_TREOI; Protein SHORT INTERNODES
STRING	XP_010113475.1	3e-96	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-60	Lateral root primordium (LRP) protein-related