PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21294.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 388aa    MW: 43482.6 Da    PI: 6.8384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21294.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13144195155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  PK21294.1 144 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 195
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.002143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13144199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15144210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-12144199No hitNo description
SMARTSM003534.5E-10149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
XKDFYSSMVA PNNTNNLWYE FCLQEEDEER KSLVGIFDNN PILDQTIHAN LNYHHQYSTP  60
PAIFHQSLTE QLESSISSPE VSCRPPQPPS STPPPEPLPL DQSPPSSFPC HLMDPIADPP  120
ATENGRRKRR RTRGSKNKEE LEIQRMTHIA VERNRRKQMN EYLAVLRSLM PSSYVQRGDQ  180
ASIIGGAINF VKELEQSLQS MEGHKVRTKV EHDDHEDDIR NCGRFSSNIS HSSSSLPLPL  240
TSPSPPSSSS SSTSTSPSPN YSQSSSPFAD FFTFPQYSTR ANQYYFSNNS SENGQRAAAD  300
IEVTMVDCHA NIKILSKKKP RQLLKMVAGL GALRLSVLHL NVITVQQMVL YSFSVKVEEG  360
CQMNTVDQIA ASVNQMMHKI NAELALII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126130RKRRR
2126131RKRRRT
3144155RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098698.11e-101transcription factor bHLH96
SwissprotQ9C7T48e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2P5BDJ01e-127A0A2P5BDJ0_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010098698.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]