PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK21189.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 449aa MW: 51337.1 Da PI: 6.797

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK21189.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.1	3.7e-26	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ + ++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk++++ +++ +++++++ +++d + PK21189.1 122 KWTDKMVKLLITAVSYIGEDAGPDCsgggrrkfavlQKKGKWKSVSKVMAERGFNVSPQQCEDKFNDLNKRYKRLNDVLGRGtSCQVVENPALLDVI 218 7*******************99888899999999********************************************569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-23	120	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEGHLSHGGI IPGGASYGGL DLQGSIRAQH QGQHPHTIHQ QHNPNQCQTP NVRPSIREGF 60 PLTMGTLHSC DQRMSMVDYN SRGERNKNSA SEEDEPSFTE EGIDGHNEVS RGKKGSIWQR 120 VKWTDKMVKL LITAVSYIGE DAGPDCSGGG RRKFAVLQKK GKWKSVSKVM AERGFNVSPQ 180 QCEDKFNDLN KRYKRLNDVL GRGTSCQVVE NPALLDVIDY LNEKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDPAL QRSLQLALRT RDDNDNEDGR KHHHDDPDEE DQEVEIDDRD 300 DLEDNNASHG DRGMYGLGDS GKRFRQGLGQ GREDVGFGNS LNPHDCNKSS YSQPQVAQAD 360 MNQAPPDGTK VAWLQKQWVE SRSLQLEERK IQIQVEMLEL EKQRLKWQRF SKKRDRELEK 420 MRMENERMKL ENERLALELK RKEMGGGFT

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEGHLSHGGI IPGGASYGGL DLQGSIRAQH QGQHPHTIHQ QHNPNQCQTP NVRPSIREGF  60
PLTMGTLHSC DQRMSMVDYN SRGERNKNSA SEEDEPSFTE EGIDGHNEVS RGKKGSIWQR  120
VKWTDKMVKL LITAVSYIGE DAGPDCSGGG RRKFAVLQKK GKWKSVSKVM AERGFNVSPQ  180
QCEDKFNDLN KRYKRLNDVL GRGTSCQVVE NPALLDVIDY LNEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QRSLQLALRT RDDNDNEDGR KHHHDDPDEE DQEVEIDDRD  300
DLEDNNASHG DRGMYGLGDS GKRFRQGLGQ GREDVGFGNS LNPHDCNKSS YSQPQVAQAD  360
MNQAPPDGTK VAWLQKQWVE SRSLQLEERK IQIQVEMLEL EKQRLKWQRF SKKRDRELEK  420
MRMENERMKL ENERLALELK RKEMGGGFT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164957.1	0.0	uncharacterized protein LOC112172033
TrEMBL	A0A2P5DSF5	0.0	A0A2P5DSF5_PARAD; Sequence-specific DNA binding transcription factor
STRING	XP_008237585.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-176	sequence-specific DNA binding transcription factors