PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK21055.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 433aa    MW: 49066.8 Da    PI: 6.4121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK21055.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.8e-14197248155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  PK21055.1 197 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 248
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-16189260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.02E-12195250No hitNo description
PROSITE profilePS5088815.777196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-11197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13197259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDMECLEQGL TTTSSGNELR FEEEEGYVLS RGLDERMPFL EMLQSVDSPS FLPLKDPSFQ  60
TLLRLQHMKK PWEPNTNGCS YHSFMPPQLD TQHQIQGLEL ESCVTNEIAE LHSPIKSETK  120
DLHYHHYSTT EQQQAGVSSE CNQQERQPNK KLAEEEEQQE KTLFKQTQNS KFPPVTRERR  180
KRKRTRPAKN KEEVESQRMT HIAVERNRRR QMNDHLNVLR SLMPTSYIQR GDQASIVGGA  240
IDFVKELEQL FQSLEAQKRI RKEGSNTNTN TNSNTTTTSN GVENSVSSSS SSSTTSNNAV  300
TMPSSHGLYM SLSQFRIGPH DHQENNNSHS NIMSSVGDEV RAENKSEAAD IVVTVIQTHV  360
NLKIQCPRRP GQLLKAILAL EELRLAILHL NITSSQATVL YSFNLKIEDE CKLGSADEIA  420
GAVHQIFRFI DAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RRKRKR
2197208RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932305.11e-155transcription factor bHLH70 isoform X3
TrEMBLA0A2P5FHC30.0A0A2P5FHC3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008244210.11e-148(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-48bHLH family protein