PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20894.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 124aa    MW: 14535.9 Da    PI: 10.1554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20894.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-3343101159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  PK20894.1  43 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 101
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-3429101IPR003657WRKY domain
SuperFamilySSF1182905.75E-2936102IPR003657WRKY domain
PROSITE profilePS5081129.05738103IPR003657WRKY domain
SMARTSM007745.6E-3843102IPR003657WRKY domain
PfamPF031062.6E-2644101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
EDHNNNNNNE EDNQSNKRRA PGKSRKTARP RFAFQTRSAD DILDDGYRWR KYGQKAVKNS  60
AYPRSYYRCT HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLT PLLRQMQFLS  120
ASNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2633100774Probable WRKY transcription factor 4
2lex_A3e-2633100774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297361e-77KP229736.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY07) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112967.21e-74probable WRKY transcription factor 43
SwissprotQ8VWQ43e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLW9SMI06e-72W9SMI0_9ROSA; Putative WRKY transcription factor 56
STRINGXP_010112967.11e-72(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-58WRKY DNA-binding protein 56