PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20695.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 455aa    MW: 49914.9 Da    PI: 7.5972
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20695.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33207264260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  PK20695.1 207 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 264
                8****************************************.***************85 PP
2WRKY1062e-33383441159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  PK20695.1 383 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 441
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28198265IPR003657WRKY domain
PROSITE profilePS5081123.904201265IPR003657WRKY domain
SuperFamilySSF1182901.01E-25205265IPR003657WRKY domain
SMARTSM007741.3E-36206264IPR003657WRKY domain
PfamPF031068.9E-26207263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37368443IPR003657WRKY domain
SuperFamilySSF1182902.22E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.377378443IPR003657WRKY domain
SMARTSM007743.1E-39383442IPR003657WRKY domain
PfamPF031066.7E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTTSFSDLLS SGTDEEPIND AAGEEGRRGL SDRIAERTGW GVPKFKSLPP PSLPISPPSV  60
SPSSYFAIPP GLSPAELLDS PVLLNSSNIL PSPTTGRFAS QVSSWKNSYG DNQQSVKQEQ  120
KSYSDFSFQT QTKPPTSSSS MFQSSNTSAQ TAWTNSFQEQ TKQRDEYSSG KSTANNNVQT  180
NGGGFQSDYS NNNHPQQQAQ ALSRRSDDGY NWRKYGQKQV KGSENPRSYY KCTYPNCPTK  240
KKVERSLDGQ ITEIVYKGSH NHPKPQATRR SSSAAAPPPA SSALIQSSNL SNSEIPDQSY  300
VSQGNGQMDS AATPENSSIS IGDEDFEQSS QKTKSGGDEF DEDEPDAKRW KREAENEGIS  360
APGSRTVREP RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCPVRKHV  420
ERASHDLRAV ITTYEGKHNH DVPAARGSGD HSINX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38207444878Probable WRKY transcription factor 4
2lex_A4e-38207444878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021810565.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-140WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2P5AFD20.0A0A2P5AFD2_TREOI; WRKY domain containing protein
STRINGEMJ094890.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]