PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20651.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26509 Da    PI: 6.7921
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20651.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i+n + rqvtfskRr+g+ KKAeELSvLCda+v +iifsstgkl+eys+
  PK20651.1  9 KKIDNATARQVTFSKRRKGLVKKAEELSVLCDADVGLIIFSSTGKLFEYSN 59
               68***********************************************95 PP
2K-box53.88.4e-19911721899
      K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++ ++kL kei++  + +R+l Ge+L+ L+++eLq+Le+ Le +l+++ +kK e ++++i+elq+k k+l een++Lr+++ 
  PK20651.1  91 NNTYSKLCKEISEKSHHLRQLRGEELHGLNIEELQRLEKSLEVGLSRVIEKKGEKIMKEINELQMKGKQLMEENERLRQQVV 172
                67899**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.843161IPR002100Transcription factor, MADS-box
CDDcd002657.04E-39273No hitNo description
PRINTSPR004043.8E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-30374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.41987177IPR002487Transcription factor, K-box
PfamPF014861.5E-1592171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRKGLVK KAEELSVLCD ADVGLIIFSS TGKLFEYSNT  60
SMKEIIDRHH LHSTNLEKLE QPSLKLQLVE NNTYSKLCKE ISEKSHHLRQ LRGEELHGLN  120
IEELQRLEKS LEVGLSRVIE KKGEKIMKEI NELQMKGKQL MEENERLRQQ VVEICNGRTR  180
EGGTTTNTDS EYVITTEEGQ SSESVTNVCS SNGPPQDYDS TSDTSLKLGL PYAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20169169MEF2C
5f28_B5e-20169169MEF2C
5f28_C5e-20169169MEF2C
5f28_D5e-20169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028572.11e-126MADS-box protein JOINTLESS isoform X1
RefseqXP_024028573.11e-126MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY61e-110JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2P5AQG71e-137A0A2P5AQG7_PARAD; MADS-box transcription factor
STRINGcassava4.1_015543m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]