PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20354.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 255aa    MW: 28055.7 Da    PI: 8.4958
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20354.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23135236199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l++
  PK20354.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQHLLL 231
                99*****************************9445444.38************************************************..5689999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  PK20354.1 232 GIRRA 236
                **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-42123254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-42128250IPR015300DNA-binding pseudobarrel domain
CDDcd100177.60E-21134235No hitNo description
PfamPF023621.3E-21135236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843135237IPR003340B3 DNA binding domain
SMARTSM010199.6E-23135237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKAPANGVAG ASVAASPNPL EGAEKKSINQ ELWQACAGPL VNLPPAGTHV VYFPQGHSEQ  60
VAASMKKDVD SQIPNYPNLP SKLLCLLHSV TLHADPETDE VYAQMTLQPV QTVDKDALLR  120
SDLALKTNKP QPEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELVARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQHLL LGIRRANRQP  240
TNLSSSVLSS DSMHX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1182225445277Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023546642.11e-156auxin response factor 19-like
SwissprotQ0D9R71e-134ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A2P5E7031e-155A0A2P5E703_TREOI; Auxin response factor
STRINGXP_009370019.11e-152(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1392445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-125auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]