PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20141.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 610aa    MW: 70243.3 Da    PI: 4.9506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20141.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003581600221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C++Cg+ F +k  L++H++
  PK20141.1 581 TCEKCGEEFESKNKLHKHLS 600
                6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.6E-23676IPR001623DnaJ domain
SMARTSM002718.4E-23769IPR001623DnaJ domain
SuperFamilySSF465651.7E-22873IPR001623DnaJ domain
PROSITE profilePS5007619.262877IPR001623DnaJ domain
CDDcd062572.88E-18866IPR001623DnaJ domain
PfamPF002263.0E-21974IPR001623DnaJ domain
PRINTSPR006251.1E-141028IPR001623DnaJ domain
PRINTSPR006251.1E-142843IPR001623DnaJ domain
PRINTSPR006251.1E-144969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.98E-12299347No hitNo description
SMARTSM004515.7E-5302336IPR003604Zinc finger, U1-type
PROSITE profilePS501578.538305334IPR007087Zinc finger, C2H2
SMARTSM003550.27305329IPR015880Zinc finger, C2H2-like
PfamPF121717.3E-9305330IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280307329IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889580609IPR007087Zinc finger, C2H2
SMARTSM003551.6580604IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280582604IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAASGRRCHY EVLGLQQECT PDEIRSAYRK MALQLHPDKL VQSGLSQAEA TAKFQELVQA  60
YEVLSDSKER AWYDSHRSQI LFADPNSANS VPDSVIPNLF SFFSNTVYSG YTDKGKGFYK  120
VYSDVFNKLY ANEISFITRL GLSSDLVREA PAMGNLDSPY AQVTAFYGYW LGFSTVMDFC  180
WVDQYDAMAG PNRKSRRVME EENKKLRKKA KREYNDTVRG LAEFVKKRDK RVIDMTRKRN  240
LEMEKKREEE KERKKRLERE KLERAMAYEE PEWARIAEED EDEEEVDLKG FEEVDEKKKT  300
EAEELYCMMC GKKFKSEKQW KNHEQSKKHR EKVAEFRDSI EDEESLEVEV GEKDEVDDGV  360
DELVEQLKDD VRIGEEETQV SDRSDEFYGV DNADKSTEFE EKTGIDNLDE DGDNDGNVEE  420
KEDGEDEIGF LEAMLGGRKN RRNGFLRREL NETSTTKVNV ENDSDEFEFM DYNKTKSTRR  480
KRGARKERSK KNGQDIEKDV INDGQGKESN GKENVQAEES SSHSVVGNGL NDKGDDNDSS  540
FVENKKSASQ CHDRKGNDTN TKSKNSSKGR KAKAIKHSSN TCEKCGEEFE SKNKLHKHLS  600
DTGHAATKYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dmx_A7e-14374573DnaJ homolog subfamily B member 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKLRKKAKR
2236255RKRNLEMEKKREEEKERKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883263.10.0DNAJ protein JJJ1 homolog
RefseqXP_024929102.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2P5A7X40.0A0A2P5A7X4_PARAD; TFIIH C1-like domain containing protein
STRINGXP_008240022.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-175DNAJ heat shock N-terminal domain-containing protein