PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK20089.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 426aa MW: 46343.2 Da PI: 5.7294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK20089.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	353	398	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +AveYIk+Lq PK20089.1 353 SIAERVRRTKISERMRKLQELVPNM----EKQTNTADMLDLAVEYIKDLQ 398 689*******************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.078	347	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-16	350	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-12	351	402	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.7E-16	352	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	353	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-13	353	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MESDLQHPQQ QMGSSSGLMR YRSAPSSYFT NIVDREFCQQ FFNRPSSPET ERIFARFMNS 60 DGGGGGVGDE DVGLADTTAQ KLSSENTQFV TPATMSNEPA GGVLPPQPPP QQPTNLNSYS 120 SASPSFYQSQ SKPPLPTQNM ASSNEGSSYV NQFPTMRTGG VNNSNLIRHS SSPAGLFASI 180 NIESLTAMRG MGSYGATTST NEDTTFSSLN KLKNFSSGAG LMSPLDEIID DKTLVAAIQD 240 SSTEAFGEGH SNSNFVPNFP LGSWDDSALI SDNISGLKRL RDEDEKPFSG LNKSLSETQS 300 VEAGTRPPTM LAHHLSLPKT SSEMAAIEKF LQFQDSVPCK IRAKRGCATH PRSIAERVRR 360 TKISERMRKL QELVPNMEKQ TNTADMLDLA VEYIKDLQSQ VQTLSDDRAK CRVQTSISNN 420 SKSPGX

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MESDLQHPQQ QMGSSSGLMR YRSAPSSYFT NIVDREFCQQ FFNRPSSPET ERIFARFMNS  60
DGGGGGVGDE DVGLADTTAQ KLSSENTQFV TPATMSNEPA GGVLPPQPPP QQPTNLNSYS  120
SASPSFYQSQ SKPPLPTQNM ASSNEGSSYV NQFPTMRTGG VNNSNLIRHS SSPAGLFASI  180
NIESLTAMRG MGSYGATTST NEDTTFSSLN KLKNFSSGAG LMSPLDEIID DKTLVAAIQD  240
SSTEAFGEGH SNSNFVPNFP LGSWDDSALI SDNISGLKRL RDEDEKPFSG LNKSLSETQS  300
VEAGTRPPTM LAHHLSLPKT SSEMAAIEKF LQFQDSVPCK IRAKRGCATH PRSIAERVRR  360
TKISERMRKL QELVPNMEKQ TNTADMLDLA VEYIKDLQSQ VQTLSDDRAK CRVQTSISNN  420
SKSPGX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876019.1	1e-168	transcription factor bHLH122-like
Refseq	XP_023916484.1	1e-168	transcription factor bHLH130-like isoform X1
Refseq	XP_023916485.1	1e-168	transcription factor bHLH130-like isoform X1
TrEMBL	A0A2P5EUL6	0.0	A0A2P5EUL6_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010091980.1	1e-164	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-71	bHLH family protein