PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19698.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 155aa    MW: 18189.6 Da    PI: 9.842
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19698.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.8e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+++fs++gkl eys+
  PK19698.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALLVFSTKGKLSEYST 59
               79***********************************************96 PP
2K-box88.51.3e-2976154280
      K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                ++++  s++ +++ s++ e+akLk+++e Lqr+q+h++Ge+L+sLs+keLq+LeqqL+++lk++Rs+Kn+l++e+i++l
  PK19698.1  76 AERQLMSNDPEQTGSWTLEHAKLKARMEVLQRNQKHFMGEELDSLSMKELQNLEQQLDSALKHVRSRKNQLMYESISDL 154
                6677778888999**************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-34291IPR002100Transcription factor, MADS-box
CDDcd002653.24E-40279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2387154IPR002487Transcription factor, K-box
PROSITE profilePS5129713.54888155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALLVFST KGKLSEYSTN  60
SSMERILERY ERYSYAERQL MSNDPEQTGS WTLEHAKLKA RMEVLQRNQK HFMGEELDSL  120
SMKELQNLEQ QLDSALKHVR SRKNQLMYES ISDLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-21174173Myocyte-specific enhancer factor 2B
1tqe_Q5e-21174173Myocyte-specific enhancer factor 2B
1tqe_R5e-21174173Myocyte-specific enhancer factor 2B
1tqe_S5e-21174173Myocyte-specific enhancer factor 2B
6c9l_A5e-21174173Myocyte-specific enhancer factor 2B
6c9l_B5e-21174173Myocyte-specific enhancer factor 2B
6c9l_C5e-21174173Myocyte-specific enhancer factor 2B
6c9l_D5e-21174173Myocyte-specific enhancer factor 2B
6c9l_E5e-21174173Myocyte-specific enhancer factor 2B
6c9l_F5e-21174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024832.12e-97truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ6E6S71e-91AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ394018e-96Q39401_BETPN; MADS5 protein
STRINGEOY221356e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-84AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]