PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18872.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 252aa    MW: 28777.4 Da    PI: 9.1833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18872.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-0594116223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+++++++ +L  Hi+  H
  PK18872.1  94 SCSVCSRVYPTSRLLSIHISEaH 116
                6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.446691IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806891IPR007087Zinc finger, C2H2
SMARTSM00355593116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
SMARTSM003557.1131156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMEVEQSQV AFPYWKPLLR KFDPDSPFFA AGNIERELLA KQVALDLTED EKHYVRSWVD  60
EDSRSVSCPI AGCGAHLTSL EDFEDHYNAR HTASCSVCSR VYPTSRLLSI HISEAHDSFF  120
QAKVARGYTM YECLVESCTL KFKNYKSRHQ HLVDKHKFPT SFEFFKKSHA SKKLRQKQQR  180
KQAIHKKTDT SNMEVENETI DNLVSAVSKL STSDSSPSSI SFGRRNTRGL TFVPRAIQRD  240
KRPGSSSTET KT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379104.21e-143zinc finger protein 511
TrEMBLA0A2P5CJX11e-153A0A2P5CJX1_PARAD; TFIIH C1-like domain containing protein
TrEMBLA0A2P5FC821e-153A0A2P5FC82_TREOI; TFIIH C1-like domain containing protein
STRINGXP_008379104.11e-140(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-106zinc ion binding;nucleic acid binding;zinc ion binding