PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18828.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 91aa    MW: 10186.5 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18828.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-0821571854
               HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               +  ++Lr+l+P+ + + ps K+s + +L+++++YI++L
  PK18828.1 21 ELVSKLRQLVPEiR-NRPSAKVSASKVLQETCNYIRNL 57
               56689*******77.9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.001357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-91777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-81773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-52157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQSG SSRISDDQIL ELVSKLRQLV PEIRNRPSAK VSASKVLQET CNYIRNLNRE  60
VDDLSDRLSQ LLATIDADSA EASIIRSLVS Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022134204.15e-49transcription factor PRE6
SwissprotQ9LJX11e-36PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4FW893e-47A0A2I4FW89_JUGRE; transcription factor PRE6-like
STRINGGLYMA09G37370.13e-45(Glycine max)
STRINGGLYMA18G49320.12e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-32bHLH family protein