PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18657.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 153aa    MW: 17278.9 Da    PI: 11.1586
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18657.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-1873107135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  PK18657.1  73 CQHCGAEKTPQWRAGPCGPKTLCNACGVRYKSGRL 107
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-1567117IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-1469130No hitNo description
PROSITE profilePS5011411.87370103IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-1471105IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.43E-1372120No hitNo description
PfamPF003204.4E-1673107IPR000679Zinc finger, GATA-type
PROSITE patternPS0034407398IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
XRSKRRCRRR RGSYFDMSGE KLFLSIGNCH HSVKTEKKKK KRKKAMKKDN KTTTMTLMTS  60
AAKMSGGIMG RKCQHCGAEK TPQWRAGPCG PKTLCNACGV RYKSGRLVPE YRPASSPSFS  120
SDLHSNSHRK IIEMRKGKNV VGMMVENHNP IES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13647KKKKKRKKAMKK
23742KKKKRK
33743KKKKRKK
43943KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595256.16e-44GATA transcription factor 1-like
SwissprotQ8LAU97e-43GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2C9UD001e-42A0A2C9UD00_MANES; Uncharacterized protein
TrEMBLA0A2P5EHJ62e-42A0A2P5EHJ6_TREOI; GATA transcription factor
STRINGcassava4.1_014105m2e-43(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.16e-44GATA transcription factor 1