PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36664.7 Da PI: 7.4982 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 49 | 96 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL ++l ++ +K++Ka+iL+ +++ +k+L PK18401.1 49 LQKADREKLRRDRLNEHFIELGSVLDPD----RPKNDKATILTDTIQLLKDL 96 56778*******************9997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-11 | 46 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.503 | 46 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 46 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.98E-8 | 47 | 100 | No hit | No description |
Pfam | PF00010 | 1.9E-7 | 49 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-8 | 52 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MNQLQHEDFI QSPNPPSDPG LPSSSARSQP TSSKRPEGET KDGTVARKLQ KADREKLRRD 60 RLNEHFIELG SVLDPDRPKN DKATILTDTI QLLKDLTSQV DKLKAEYTML NEESRELTQE 120 KNDLREEKTS LKSDIENLNV QCQQRVRTMF PWAAMDHSVV MAPTSYPYPV PISMPQGPIP 180 LHPHMQPYPY YGNQNPGVIP NPCSTFVPYI TPSTLVEQQS QQYVSPVVQP VRRSNVSGKQ 240 DSRNKSSGES KIEKSEDSSD VATNLELKTP GSATDQDSGQ GQSQRYVSKE CKITEKSSSS 300 RCSSSRSVQD SSSNSIVSSR KPDNQKKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893436.1 | 1e-161 | transcription factor bHLH121-like | ||||
Swissprot | Q9LT23 | 6e-98 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A2P5C1Z6 | 1e-173 | A0A2P5C1Z6_PARAD; Basic helix-loop-helix transcription factor | ||||
TrEMBL | A0A2P5ED01 | 1e-173 | A0A2P5ED01_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | EOX97758 | 1e-149 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 8e-89 | bHLH family protein |
Publications ? help Back to Top | |||
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