PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18276.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 325aa    MW: 36681.7 Da    PI: 6.6921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18276.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l + v ++G g+W++++ + g+ R +k+c++rw +yl
        PK18276.1 15 KGLWSPEEDLRLRNFVLKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.52.7e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++ E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
        PK18276.1  68 RGTFSQHEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-22965IPR009057Homeodomain-like
PROSITE profilePS5129418.2771062IPR017930Myb domain
SuperFamilySSF466891.17E-2812109IPR009057Homeodomain-like
SMARTSM007179.4E-111464IPR001005SANT/Myb domain
PfamPF002495.5E-141562IPR001005SANT/Myb domain
CDDcd001671.35E-91862No hitNo description
PROSITE profilePS5129425.68163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2666117IPR009057Homeodomain-like
SMARTSM007173.6E-1667115IPR001005SANT/Myb domain
PfamPF002499.9E-1668113IPR001005SANT/Myb domain
CDDcd001673.21E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGCKSQDKPK PKHRKGLWSP EEDLRLRNFV LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSQHEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKA  120
EEELLTEQST KTQCTTSSSE SSPSSEKTNS NNRIPSYESL DQMVEKSLLH HNDQSVLFNN  180
TNHYSIDQQQ PKISSLPKLL FAEWLSIDQI NNSNNNNSIS HNGPNSANIM VQPMVPRENF  240
GHSLSFQDGM GHGVLLNEGI FGGCGDQFSN GVSDSDLLHS EFKFDEDEIS GNGFGHDLIC  300
GSTDDVCLNI HDDFSMHSDG IYSFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-23151174105C-Myb DNA-Binding Domain
1msf_C1e-23151174105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878037.11e-116transcription factor LAF1-like
RefseqXP_015878099.11e-116transcription factor LAF1-like
TrEMBLA0A2P5CZD71e-148A0A2P5CZD7_TREOI; MYB transcription factor
STRINGXP_010107436.11e-115(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-58myb domain protein 19