PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17577.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 556aa    MW: 61755.4 Da    PI: 8.6745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17577.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05109130223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C+ Cgk F ++  L  H++ H
  PK17577.1 109 SCKECGKGFQSWKALFGHMKQH 130
                6*******************98 PP
2zf-C2H212.50.00046468490123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C k+Fs+   L  H r+H
  PK17577.1 468 HECPICFKVFSSGQALGGHKRSH 490
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5635No hitNo description
PROSITE profilePS501579.515936IPR007087Zinc finger, C2H2
SMARTSM003550.75931IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-5932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0078108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803108135IPR007087Zinc finger, C2H2
SuperFamilySSF576675.96E-8109130No hitNo description
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
PfamPF139123.1E-7110132IPR007087Zinc finger, C2H2
SuperFamilySSF576675.96E-8366393No hitNo description
SMARTSM003550.095371393IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-11371395IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471371398IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
SMARTSM003550.09468490IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-11468491IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39468490IPR007087Zinc finger, C2H2
PROSITE patternPS000280470490IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEDGRELKHA CKFCHKSFPC GRSLGGHMRS HLTNNQAETD EKLNSNRSKL SSVNNGGGGN  60
NTKTNKPGCS ETGGGGPHHL NYGLRENPKK TWRISDSSTE ETLVFENKSC KECGKGFQSW  120
KALFGHMKQH SEKERASSIN NNNNSFNLEE QDSWTSGDQK QLLAMDSQSD NETTATHPNR  180
KRRSQRRTRY MGTTNSSSFS VVNNGSSSVS EIEQEQEEVA MCLMMLSRDV NNNHWVGGFK  240
SVAESSDNFS ESSKSPSSRT VCKTPATNGS EVRKSRKRNA RTSEPAKMDS GVMKSCSRMN  300
ASEVKDKIKM KLKSDETELA QLGSKKYLNS TKRSLNFDHY DPNLRVDSLK KLSPDVSDPE  360
MFKISHKRSK FECTTCNKVF YSYQALGGHR ASHKKSKGCF ASIIDSCENS IETDNISPEP  420
TAEDDHDHDH DDKSLIDDHH NMPAGDDKKA QREVVEKIKV SKKSSKGHEC PICFKVFSSG  480
QALGGHKRSH LINSSSDAKS SQTIVIKKPI PGIRDFLDLN LPAPDEEDSN GHVASLKPWW  540
GGSSHKHEAF VGLISN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286224.10.0uncharacterized protein LOC110417943 isoform X1
TrEMBLA0A2P5FW050.0A0A2P5FW05_TREOI; Zinc finger transcription factor
STRINGEOY220000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-27C2H2-like zinc finger protein