PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK16911.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 346aa MW: 39180.2 Da PI: 9.5998

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK16911.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.7	2.1e-18	140	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v + +l lp kf+e++ ++k + +++ lede+g++++ + +k+++ l++GW+ F+ +++L++gD +vF+l++ ++f ++ ++r PK16911.1 140 FVKSMVRSHVYSCFWLGLPSKFCENY-LPK-SIVDMELEDEDGKEFDAIY--IGKRSG--LSGGWRAFALEHKLNDGDACVFELVEPTRF--KIYIVR 229 89*******************888.343.4479***********..555544..9********************9876776..666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.9E-21	131	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-22	135	231	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.06E-26	138	229	No hit	No description
Pfam	PF02362	1.4E-16	140	228	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-25	140	231	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.266	140	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MTSNGDSNTY EEVRKQRLEE NKKRFEDLGI AKITKSLSDL TNSEKKSPQR HLSKPRSKIC 60 NSVEPRRSSR SRNPVQSYCD EVYVELPSSR KRSRSNPSSW ASYLARPLDE VIIASYEERN 120 AAFKAAEELE SSLKSENPTF VKSMVRSHVY SCFWLGLPSK FCENYLPKSI VDMELEDEDG 180 KEFDAIYIGK RSGLSGGWRA FALEHKLNDG DACVFELVEP TRFKIYIVRV SLVSSKQIKE 240 NSSNGAKEKS TGKMKKDSSK SKQTKKLKKL EELPTKCMID DEEEQGVSPN KRNGCVSKSV 300 KKEVESEKAS ETNDDDAAAL GQESAKCSFR RSKRKLTPKS SRHSLI

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MTSNGDSNTY EEVRKQRLEE NKKRFEDLGI AKITKSLSDL TNSEKKSPQR HLSKPRSKIC  60
NSVEPRRSSR SRNPVQSYCD EVYVELPSSR KRSRSNPSSW ASYLARPLDE VIIASYEERN  120
AAFKAAEELE SSLKSENPTF VKSMVRSHVY SCFWLGLPSK FCENYLPKSI VDMELEDEDG  180
KEFDAIYIGK RSGLSGGWRA FALEHKLNDG DACVFELVEP TRFKIYIVRV SLVSSKQIKE  240
NSSNGAKEKS TGKMKKDSSK SKQTKKLKKL EELPTKCMID DEEEQGVSPN KRNGCVSKSV  300
KKEVESEKAS ETNDDDAAAL GQESAKCSFR RSKRKLTPKS SRHSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094448.1	1e-127	putative B3 domain-containing protein At5g58280
Refseq	XP_024020034.1	1e-127	putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	1e-68	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A2P5DHU6	1e-159	A0A2P5DHU6_PARAD; B3 DNA binding domain containing protein
STRING	XP_010094448.1	1e-126	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-60	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]