PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16897.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | YABBY | ||||||||
Protein Properties | Length: 235aa MW: 26282.7 Da PI: 7.9356 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 221.7 | 2.1e-68 | 16 | 198 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvv..tvrCGhCtsllsvnlakasqllaaeshldeslkee.....lleelkveeenlksnvekeesast 94 ++ ssseq+Cyv+Cn C+t+lavsvP +slfk v tvrCGhCt+ll vn+ + + hl++s+ ++ llee ++ n+ +n+++ PK16897.5 16 HLSSSSEQLCYVHCNICDTVLAVSVPCSSLFKSVtlTVRCGHCTNLLPVNMCGLLLPSPNQFHLGHSFFNPashhnLLEEIPNSAPNFLMNQSSMA---- 111 56799**************************9773369***************9999999******998776666655555555555444443332.... PP YABBY 95 svssekl...........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ +++++e++r+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl PK16897.5 112 DFAVVPPrgvnntrhhdhHHHHHHEISRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 198 2222111222333444447788999***999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.7E-67 | 20 | 198 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.1E-7 | 141 | 191 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.0E-4 | 147 | 192 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSSSSASTIL PQQLDHLSSS SEQLCYVHCN ICDTVLAVSV PCSSLFKSVT LTVRCGHCTN 60 LLPVNMCGLL LPSPNQFHLG HSFFNPASHH NLLEEIPNSA PNFLMNQSSM ADFAVVPPRG 120 VNNTRHHDHH HHHHHEISRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDISHREA 180 FSAAAKNWAH FPHIHFGLMP DQTGKKTNVR QQEGEDVLMK DGFFASANQV GVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146879 | 7e-62 | BT146879.1 Lotus japonicus clone JCVI-FLLj-2N22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866124.1 | 1e-124 | axial regulator YABBY 1 isoform X2 | ||||
Swissprot | Q01JG2 | 3e-76 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 3e-76 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | W9QUG4 | 1e-121 | W9QUG4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010093672.1 | 1e-122 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 6e-76 | YABBY family protein |
Publications ? help Back to Top | |||
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