PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16711.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 421aa    MW: 47839.4 Da    PI: 6.4334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16711.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001260279120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  PK16711.1 260 FSCPLCFKTFNRYNNMQMHM 279
                89*****************9 PP
2zf-C2H214.20.00013344366123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  PK16711.1 344 FMCRKCGKAFAVRGDWRTHEKNC 366
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66260287IPR007087Zinc finger, C2H2
SMARTSM003550.61260282IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5260279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SuperFamilySSF576672.36E-6327364No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5340364IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808344364IPR007087Zinc finger, C2H2
SMARTSM0035549344364IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
XINLYQNHIT HAQLFLYPSS FTIIMSRDPY SNFMNGWLNL NQIHNHHNLI SSPYYDYLNN  60
SSNYNTNTTT TTTNICFNIQ NTSLLSSSSP PSPPLKEALP LLSLSPTRSS PPHDHDEYGD  120
DEEEEEEEDV DVNEHNKKKV EKKLLEDENS FLSSSLYDND QSVTVALHLG LPNPSSAYSS  180
AHDLTSRLSS TEISDNNINK GVIIREGTEE AEEEEEEDHH HVSSSSSGYH SNRSSSSSVL  240
NNGQYWIPTP SQILIGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA  300
MLRLPCFCCS PGCRNNIDHP RSRPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR  360
THEKNCGKLW YCTCGSDFKH KRSLKDHVKA FGNAHAPYGV DSFDQDDDDI LDHPPPSNDT  420
T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102319.11e-157zinc finger protein WIP5
SwissprotQ8W0311e-131ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2P5EUJ71e-163A0A2P5EUJ7_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010102319.11e-156(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]