PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16069.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 116aa    MW: 12808.6 Da    PI: 10.9192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16069.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-192676155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr +  +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  PK16069.1 26 KKYKGVRMRT-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 76
               59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.9E-221114IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.28E-192684No hitNo description
PfamPF008476.8E-122776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-312785IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212786IPR016177DNA-binding domain
SMARTSM003804.9E-342790IPR001471AP2/ERF domain
PROSITE profilePS5103221.8252784IPR001471AP2/ERF domain
PRINTSPR003672.3E-92839IPR001471AP2/ERF domain
PRINTSPR003672.3E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MVKTEKKIME QNPSKPTPLT LTTGKKKYKG VRMRTWGSWV SEIRAPNQKT RIWLGSYSTA  60
EAAARAYDAA LLCLKGSSAN LNFPLSSSTI SSHHHTMFPN DVLLSPKSIQ RVAAAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-162685161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-162685464ATERF1
3gcc_A6e-162685464ATERF1
5wx9_A2e-1527841472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921492.19e-43ethylene-responsive transcription factor ERF014
SwissprotQ9SFE42e-42ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A2P5CFQ76e-50A0A2P5CFQ7_PARAD; AP2/ERF domain containing protein
STRINGAT1G21910.18e-41(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-29ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]