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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK15358.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 234aa MW: 26477.5 Da PI: 9.229 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 29.8 | 1.1e-09 | 70 | 120 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++h +Er+RR+++ + + Lr+llP + ++K s ++ + +YIk+Lq
PK15358.1 70 MKHRDIERQRRQEMSTLHASLRSLLPLeL---IKGKRSISDHINEGARYIKQLQ 120
68*************************78...*********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 2.22E-10 | 65 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.54E-7 | 65 | 124 | No hit | No description |
| PROSITE profile | PS50888 | 12.068 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.2E-7 | 70 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 71 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 234 aa Download sequence Send to blast |
XQRRELRGTE DQILGHASLE DNAFHVDNYK DINVTTTSRR SPKSLPNDHN SNNTIVNQSS 60 STECKSNKMM KHRDIERQRR QEMSTLHASL RSLLPLELIK GKRSISDHIN EGARYIKQLQ 120 LKIKELDAKR DHLKKYYYLS DSSSTERTNH PGRPGSSRNS STPQDHFLTV QPCGECGVEI 180 VISACGFPLS KVLQLVLEEG FGLVSCISTE VNGRMLHTIK SEVPTIRVSI VIFX |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010109067.1 | 4e-61 | transcription factor bHLH120 isoform X1 | ||||
| Refseq | XP_024029678.1 | 4e-61 | transcription factor bHLH120 isoform X1 | ||||
| Refseq | XP_024029679.1 | 4e-61 | transcription factor bHLH120 isoform X1 | ||||
| Refseq | XP_024029680.1 | 4e-61 | transcription factor bHLH120 isoform X1 | ||||
| Refseq | XP_024029681.1 | 1e-61 | transcription factor bHLH120 isoform X2 | ||||
| TrEMBL | A0A2P5D9K2 | 1e-83 | A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor | ||||
| STRING | XP_010109067.1 | 1e-60 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF792 | 33 | 125 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 4e-36 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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